Ranjith Gouri Priya, Satheeshan Jisha, Sabu K K
Jawaharlal Nehru Tropical Botanic Garden and Research Institute, Palode, Thiruvananthapuram 695562, India.
Data Brief. 2020 Oct 22;33:106451. doi: 10.1016/j.dib.2020.106451. eCollection 2020 Dec.
MicroRNAs (miRNAs) are small (21-24 nucleotides), non-coding, riboregulators that regulate gene expression in eukaryotes. Pentacyclic triterpenoid saponins and sapogenins known as centellosides of the plant (L.) Urb. are known for their broad spectrum medicinal properties. Two accessions viz.,CA301 and CA308 were selected for the miRNAome profiling. Total RNA isolated from fresh young leaves of both accessions along with their replicas was used for library construction. Illumina® sequencing of the four small RNA libraries generated a total of 59,234,923; 58,487,817; 59,520,376; 64,093,228 raw reads. The raw reads were quality filtered and used for the prediction of conserved and novel miRNAs. A total of 227 conserved and 109 novel microRNAs were identified from the libraries. Target gene prediction done using psRNAtarget and PANTHER™GO helped in localization of predicted targets. KEGG (Kyoto Encyclopedia for Genes and Genomes) was used for pathway prediction of the targets of predicted miRNAs. The present study provides first elaborated glimpse of miRNA pool of The outcome of this research could help understand miRNA dependent regulation of centelloside biosynthesis and to design further metabolic engineering experiments to enhance their content in this important medicinal plant.
微小RNA(miRNA)是小的(21 - 24个核苷酸)、非编码的核糖调节因子,可调节真核生物中的基因表达。植物积雪草(Centella asiatica (L.) Urb.)中的五环三萜皂苷和皂苷元,即积雪草苷,以其广泛的药用特性而闻名。选择了两个种质,即CA301和CA308进行miRNA组分析。从这两个种质的新鲜幼叶及其复制品中分离的总RNA用于文库构建。四个小RNA文库的Illumina®测序共产生了59,234,923、58,487,817、59,520,376、64,093,228条原始读数。对原始读数进行质量过滤,并用于预测保守和新的miRNA。从文库中总共鉴定出227个保守的和109个新的微小RNA。使用psRNAtarget和PANTHER™GO进行的靶基因预测有助于预测靶标的定位。京都基因与基因组百科全书(KEGG)用于预测miRNA靶标的通路。本研究首次详细展示了积雪草的miRNA库。这项研究的结果有助于了解积雪草苷生物合成的miRNA依赖性调控,并设计进一步的代谢工程实验以提高这种重要药用植物中它们的含量。