Zoologisches Institut, Technische Universität Braunschweig, Mendelssohnstr. 4, 38106, Braunschweig, Germany.
Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstr. 21, 81247, München, Germany.
Sci Rep. 2020 Nov 5;10(1):19109. doi: 10.1038/s41598-020-75431-9.
Taxonomic progress is often hindered by intrinsic factors, such as morphologically cryptic species that require a broad suite of methods to distinguish, and extrinsic factors, such as uncertainties in the allocation of scientific names to species. These uncertainties can be due to a wide variety of factors, including old and poorly preserved type specimens (which contain only heavily degraded DNA or have lost important diagnostic characters), inappropriately chosen type specimens (e.g. juveniles without diagnostic characters) or poorly documented type specimens (with unprecise, incorrect, or missing locality data). Thanks to modern sequencing technologies it is now possible to overcome many such extrinsic factors by sequencing DNA from name-bearing type specimens of uncertain assignment and assigning these to known genetic lineages. Here, we apply this approach to frogs of the Mantidactylus ambreensis complex, which was recently shown to consist of two genetic lineages supported by concordant differentiation in mitochondrial and nuclear genes. These lineages co-occur on the Montagne d'Ambre Massif in northern Madagascar but appear to have diverged in allopatry. We use a recently published bait set based on three mitochondrial markers from all known Malagasy frog lineages to capture DNA sequences from the 127-year-old holotype of Mantidactylus ambreensis Mocquard, 1895. With the obtained sequences we are able to assign the name M. ambreensis to the lowland lineage, which is rather widespread in the rainforests of northern Madagascar, leaving the microendemic high-elevation lineage on Montagne d'Ambre in north Madagascar in need of description. We describe this species as Mantidactylus ambony sp. nov., differing from M. ambreensis in call parameters and a smaller body size. Thus, using target enrichment to obtain DNA sequence data from this old specimen, we were able to resolve the extrinsic (nomenclatural) hindrances to taxonomic resolution of this complex. We discuss the broad-scale versatility of this 'barcode fishing' approach, which can draw on the enormous success of global DNA barcoding initiatives to quickly and efficiently assign type specimens to lineages.
分类学的进展常常受到内在因素的阻碍,例如形态上隐蔽的物种,需要广泛的方法来区分,以及外在因素,例如物种学名的分配不确定。这些不确定性可能是由于多种因素造成的,包括年代久远且保存不善的模式标本(仅含有严重降解的 DNA 或失去了重要的鉴别特征)、选择不当的模式标本(例如没有鉴别特征的幼体)或记录不完整的模式标本(位置数据不准确、不正确或缺失)。由于现代测序技术的发展,现在可以通过对不确定归属的有学名的模式标本进行 DNA 测序,并将这些标本分配到已知的遗传谱系中,从而克服许多此类外在因素。在这里,我们应用这种方法来研究 Mantidactylus ambreensis 复合体的青蛙,该复合体最近被证明由两个遗传谱系组成,这两个谱系由线粒体和核基因的一致分化支持。这些谱系在马达加斯加北部的 Montagne d'Ambre 块状高地共同出现,但似乎是在异地分化的。我们使用最近发表的基于三个来自所有已知马达加斯加青蛙谱系的线粒体标记的诱饵集,从 127 岁的 Mantidactylus ambreensis Mocquard, 1895 的模式标本中捕获 DNA 序列。利用获得的序列,我们能够将 Mantidactylus ambreensis 的名称分配给低地谱系,该谱系在马达加斯加北部的雨林中广泛分布,而将马达加斯加北部 Montagne d'Ambre 的微地方性高地谱系留待描述。我们将该物种描述为 Mantidactylus ambony sp. nov.,与 Mantidactylus ambreensis 在叫声参数和较小的体型上有所不同。因此,通过目标富集从这个古老的标本中获取 DNA 序列数据,我们能够解决这个复合体分类学解决的外在(命名)障碍。我们讨论了这种“条形码捕鱼”方法的广泛适用性,它可以利用全球 DNA 条形码倡议的巨大成功,快速有效地将模式标本分配到谱系中。