Afamefule Chidi, Raines Christine A
School of Life Sciences, University of Essex, Colchester, United Kingdom.
Front Plant Sci. 2020 Oct 16;11:570436. doi: 10.3389/fpls.2020.570436. eCollection 2020.
C photosynthesis is characterized by the compartmentalization of the processes of atmospheric uptake of CO and its conversion into carbohydrate between mesophyll and bundle-sheath cells. As a result, most of the enzymes participating in the Calvin-Benson-Bassham (CBB) cycle, including RubisCO, are highly expressed in bundle-sheath cells. There is evidence that changes in the regulatory sequences of contribute to its bundle-sheath-specific expression, however, little is known about how the spatial-expression pattern of other CBB cycle enzymes is regulated. In this study, we use a computational approach to scan for transcription factor binding sites in the regulatory regions of the genes encoding CBB cycle enzymes, SBPase, FBPase, PRK, and GAPDH-B, of C and C grasses. We identified potential -regulatory elements present in each of the genes studied here, regardless of the photosynthetic path used by the plant. The trans-acting factors that bind these elements have been validated in and might regulate the expression of the genes encoding CBB cycle enzymes. In addition, we also found C-specific transcription factor binding sites in the genes encoding CBB cycle enzymes that could potentially contribute to the pathway-specific regulation of gene expression. These results provide a foundation for the functional analysis of the differences in regulation of genes encoding CBB cycle enzymes between C and C grasses.
C4光合作用的特点是在叶肉细胞和维管束鞘细胞之间对大气中CO2的吸收及其转化为碳水化合物的过程进行区室化。因此,参与卡尔文-本森-巴斯姆(CBB)循环的大多数酶,包括核酮糖-1,5-二磷酸羧化酶/加氧酶(RubisCO),在维管束鞘细胞中高度表达。有证据表明,其调控序列的变化有助于其维管束鞘特异性表达,然而,关于其他CBB循环酶的空间表达模式是如何调控的却知之甚少。在本研究中,我们使用一种计算方法来扫描C3和C4禾本科植物中编码CBB循环酶、景天庚酮糖-1,7-二磷酸酶(SBPase)、果糖-1,6-二磷酸酶(FBPase)、磷酸核酮糖激酶(PRK)和甘油醛-3-磷酸脱氢酶-B(GAPDH-B)的基因调控区域中的转录因子结合位点。我们在此研究的每个基因中都鉴定出了潜在的调控元件,无论植物所采用的光合途径如何。与这些元件结合的反式作用因子已在拟南芥中得到验证,并且可能调控编码CBB循环酶的基因的表达。此外,我们还在编码CBB循环酶的基因中发现了C4特异性转录因子结合位点,这些位点可能有助于基因表达的途径特异性调控。这些结果为分析C3和C4禾本科植物中编码CBB循环酶的基因调控差异的功能奠定了基础。