2017 年和 2018 年基因食品病原体监测 Gen-FS 协调能力测试数据
Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises.
机构信息
US Food and Drug Administration, College Park, MD, USA.
International Health Resource Co., Atlanta, GA, USA.
出版信息
Sci Data. 2020 Nov 19;7(1):402. doi: 10.1038/s41597-020-00740-7.
Abstract
The US PulseNet and GenomeTrakr laboratory networks work together within the Genomics for Food Safety (Gen-FS) consortium to collect and analyze genomic data for foodborne pathogen surveillance (species include Salmonella enterica, Listeria monocytogenes, Escherichia coli (STECs), and Campylobactor). In 2017 these two laboratory networks started harmonizing their respective proficiency test exercises, agreeing on distributing a single strain-set and following the same standard operating procedure (SOP) for genomic data collection, running a jointly coordinated annual proficiency test exercise. In this data release we are publishing the reference genomes and raw data submissions for the 2017 and 2018 proficiency test exercises.
摘要
美国脉冲网（PulseNet）和 GenomeTrakr 实验室网络在美国食品安全基因组学（Gen-FS）联盟内合作，共同收集和分析食源性致病菌监测的基因组数据（包括沙门氏菌、单增李斯特菌、大肠杆菌（STEC）和弯曲杆菌）。2017 年，这两个实验室网络开始协调各自的能力验证（proficiency test）方案，同意分发一组单一的菌株集，并遵循相同的基因组数据收集标准操作程序（SOP），共同开展年度能力验证协调活动。在本数据发布中，我们公布了 2017 年和 2018 年能力验证方案的参考基因组和原始数据提交。
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