• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

使用蒙特卡罗树搜索加速共聚物反向设计。

Accelerating copolymer inverse design using monte carlo tree search.

机构信息

Department of Chemical Engineering, Indian Institute of Technology Madras, Chennai, Tamil Nadu 600036, India.

出版信息

Nanoscale. 2020 Dec 8;12(46):23653-23662. doi: 10.1039/d0nr06091g.

DOI:10.1039/d0nr06091g
PMID:33216077
Abstract

There exists a broad class of sequencing problems in soft materials such as proteins and polymers that can be formulated as a heuristic search that involves decision making akin to a computer game. AI gaming algorithms such as Monte Carlo tree search (MCTS) gained prominence after their exemplary performance in the computer Go game and are decision trees aimed at identifying the path (moves) that should be taken by the policy to reach the final winning or optimal solution. Major challenges in inverse sequencing problems are that the materials search space is extremely vast and property evaluation for each sequence is computationally demanding. Reaching an optimal solution by minimizing the total number of evaluations in a given design cycle is therefore highly desirable. We demonstrate that one can adopt this approach for solving the sequencing problem by developing and growing a decision tree, where each node in the tree is a candidate sequence whose fitness is directly evaluated by molecular simulations. We interface MCTS with MD simulations and use a representative example of designing a copolymer compatibilizer, where the goal is to identify sequence specific copolymers that lead to zero interfacial energy between two immiscible homopolymers. We apply the MCTS algorithm to polymer chain lengths varying from 10-mer to 30-mer, wherein the overall search space varies from 210 (1024) to 230 (∼1 billion). In each case, we identify a target sequence that leads to zero interfacial energy within a few hundred evaluations demonstrating the scalability and efficiency of MCTS in exploring practical materials design problems with exceedingly vast chemical/material search space. Our MCTS-MD framework can be easily extended to several other polymer and protein inverse design problems, in particular, for cases where sequence-property data is either unavailable and/or is resource intensive.

摘要

存在广泛的软物质(如蛋白质和聚合物)测序问题,可以将其表述为启发式搜索,其中涉及类似于计算机游戏的决策制定。人工智能游戏算法(如蒙特卡罗树搜索(MCTS))在计算机围棋游戏中表现出色后变得引人注目,它们是决策树,旨在确定策略应采取的路径(移动)以达到最终的获胜或最佳解决方案。逆序问题的主要挑战在于材料搜索空间极其广阔,并且每个序列的属性评估计算量很大。因此,通过在给定设计周期中最小化评估总数来达到最佳解决方案是非常可取的。我们通过开发和扩展决策树来证明可以采用这种方法来解决测序问题,其中树中的每个节点都是候选序列,其适应性直接通过分子模拟进行评估。我们将 MCTS 与 MD 模拟相结合,并使用设计共聚物增容剂的代表性示例,目标是识别导致两种不混溶均聚物之间界面能为零的序列特异性共聚物。我们将 MCTS 算法应用于从 10 -mer 到 30-mer 的聚合物链长度,其中总体搜索空间从 210(1024)到 230(约 10 亿)不等。在每种情况下,我们都确定了一个目标序列,该序列在几百次评估内导致零界面能,证明了 MCTS 在探索具有极大化学/材料搜索空间的实际材料设计问题时的可扩展性和效率。我们的 MCTS-MD 框架可以很容易地扩展到其他几个聚合物和蛋白质反向设计问题,特别是在序列-属性数据不可用和/或资源密集的情况下。

相似文献

1
Accelerating copolymer inverse design using monte carlo tree search.使用蒙特卡罗树搜索加速共聚物反向设计。
Nanoscale. 2020 Dec 8;12(46):23653-23662. doi: 10.1039/d0nr06091g.
2
RNA inverse folding using Monte Carlo tree search.使用蒙特卡罗树搜索的RNA反向折叠
BMC Bioinformatics. 2017 Nov 6;18(1):468. doi: 10.1186/s12859-017-1882-7.
3
A self-learning Monte Carlo tree search algorithm for robot path planning.一种用于机器人路径规划的自学习蒙特卡罗树搜索算法。
Front Neurorobot. 2023 Jul 6;17:1039644. doi: 10.3389/fnbot.2023.1039644. eCollection 2023.
4
Accelerated Sequence Design of Star Block Copolymers: An Unbiased Exploration Strategy via Fusion of Molecular Dynamics Simulations and Machine Learning.星型嵌段共聚物的加速序列设计:一种通过分子动力学模拟与机器学习融合的无偏探索策略
J Phys Chem B. 2024 May 2;128(17):4220-4230. doi: 10.1021/acs.jpcb.3c08110. Epub 2024 Apr 22.
5
MDTS: automatic complex materials design using Monte Carlo tree search.MDTS:使用蒙特卡洛树搜索的自动复杂材料设计
Sci Technol Adv Mater. 2017 Jul 20;18(1):498-503. doi: 10.1080/14686996.2017.1344083. eCollection 2017.
6
Monte Carlo Tree Search-Based Recursive Algorithm for Feature Selection in High-Dimensional Datasets.基于蒙特卡洛树搜索的高维数据集中特征选择递归算法
Entropy (Basel). 2020 Sep 29;22(10):1093. doi: 10.3390/e22101093.
7
Monte Carlo tree search -based non-coplanar trajectory design for station parameter optimized radiation therapy (SPORT).基于蒙特卡罗树搜索的非共面轨迹设计用于站参数优化放射治疗(SPORT)。
Phys Med Biol. 2018 Jul 2;63(13):135014. doi: 10.1088/1361-6560/aaca17.
8
Efficient retrosynthetic planning with MCTS exploration enhanced A search.通过蒙特卡洛树搜索(MCTS)探索增强的A*搜索实现高效逆合成规划。
Commun Chem. 2024 Mar 7;7(1):52. doi: 10.1038/s42004-024-01133-2.
9
Adaptive Design of Alloys for CO Activation and Methanation via Reinforcement Learning Monte Carlo Tree Search Algorithm.基于强化学习蒙特卡罗树搜索算法的 CO 活化与甲烷化合金的自适应设计。
J Phys Chem Lett. 2023 Apr 13;14(14):3594-3601. doi: 10.1021/acs.jpclett.3c00242. Epub 2023 Apr 6.
10
MOTiFS: Monte Carlo Tree Search Based Feature Selection.MOTiFS:基于蒙特卡洛树搜索的特征选择
Entropy (Basel). 2018 May 20;20(5):385. doi: 10.3390/e20050385.

引用本文的文献

1
Applied machine learning as a driver for polymeric biomaterials design.应用机器学习推动高分子生物材料设计。
Nat Commun. 2023 Aug 10;14(1):4838. doi: 10.1038/s41467-023-40459-8.
2
Dynamic crosslinking compatibilizes immiscible mixed plastics.动态交联使不相容的混合塑料相容。
Nature. 2023 Apr;616(7958):731-739. doi: 10.1038/s41586-023-05858-3. Epub 2023 Apr 26.
3
Data-Driven Methods for Accelerating Polymer Design.加速聚合物设计的数据驱动方法。
ACS Polym Au. 2021 Dec 28;2(1):8-26. doi: 10.1021/acspolymersau.1c00035. eCollection 2022 Feb 9.
4
Inverse Design of Materials by Machine Learning.基于机器学习的材料逆向设计
Materials (Basel). 2022 Feb 28;15(5):1811. doi: 10.3390/ma15051811.
5
Integration of Machine Learning and Coarse-Grained Molecular Simulations for Polymer Materials: Physical Understandings and Molecular Design.用于聚合物材料的机器学习与粗粒度分子模拟的整合:物理理解与分子设计
Front Chem. 2022 Jan 24;9:820417. doi: 10.3389/fchem.2021.820417. eCollection 2021.