Suppr超能文献

颅内动脉瘤形成和发展的潜在生物标志物。

The potential biomarkers for the formation and development of intracranial aneurysm.

作者信息

Gao Yuyuan, Zhao Chengbin, Wang Jing, Li Hongwei, Yang Bo

机构信息

Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, No. 1 Jianshe East Road, Erqi District, Zhengzhou 450052, Henan, China; The Academy of Medical Sciences, Zhengzhou University, No. 40 University North Road, Erqi District, Zhengzhou 450052, Henan, China.

Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, No. 1 Jianshe East Road, Erqi District, Zhengzhou 450052, Henan, China.

出版信息

J Clin Neurosci. 2020 Nov;81:270-278. doi: 10.1016/j.jocn.2020.09.072. Epub 2020 Oct 17.

Abstract

This study is aimed to understand the pathogenesis of intracranial aneurysm (IA), which has a risk of rupture and is the primary cause of subarachnoid hemorrhage. From Gene Expression Omnibus (GEO) database, GSE75436 was extracted (15 IA tissues and 15 superficial temporal artery tissues). The differentially expressed genes (DEGs) was conducted through limma package, which followed by the enrichment analysis. Combining STRING database, protein-protein interaction (PPI) network was constructed. The modules in PPI network were performed utilizing molecular complex detection (MCODE) algorithm. With Cytoscape software, the transcription factor-miRNA-target regulatory network was constructed. Finally, microarray dataset GSE54083 was downloaded (13 IA tissues and 10 superficial temporal artery tissues) for the verification test. A total of 1332 DEGs were screened in IA tissues compared with superficial temporal artery tissues. Besides, the up-regulated TNF, IL10, IL1B, and CTSS, as well as down-regulated IL6 were included in the top 20 nodes in the PPI networks. Furthermore, in the module A of up-regulated PPI network, TNF, IL10, IL1B, and VCAM1 were interact with each other. In the regulatory network, miR-29A/B/C targeted up-regulated genes. Besides, VCAM1 was implicated in the pathway of leukocyte transendothelial migration. In the verification analysis, between GSE75436 and GSE54083, there were 444 up-regulated and 543 down-regulated co-existence DEGs and 11 co-existence genes involved the Leukocyte transendothelial migration pathway. VCAM1, TNF, CTSS, IL10, IL1B, IL6, and miR-29A/B/C might be the potential biomarkers for the formation and development of IA.

摘要

本研究旨在了解颅内动脉瘤(IA)的发病机制,IA存在破裂风险,是蛛网膜下腔出血的主要原因。从基因表达综合数据库(GEO)中提取了GSE75436(15个IA组织和15个颞浅动脉组织)。通过limma软件包进行差异表达基因(DEG)分析,随后进行富集分析。结合STRING数据库,构建了蛋白质-蛋白质相互作用(PPI)网络。利用分子复合物检测(MCODE)算法对PPI网络中的模块进行分析。使用Cytoscape软件构建转录因子- miRNA-靶标调控网络。最后,下载微阵列数据集GSE54083(13个IA组织和10个颞浅动脉组织)进行验证测试。与颞浅动脉组织相比,在IA组织中共筛选出1332个DEG。此外,上调的肿瘤坏死因子(TNF)、白细胞介素10(IL10)、白细胞介素1β(IL1B)和组织蛋白酶S(CTSS)以及下调的白细胞介素6(IL6)都包含在PPI网络的前20个节点中。此外,在上调的PPI网络模块A中,TNF、IL10、IL1B和血管细胞黏附分子1(VCAM1)相互作用。在调控网络中,miR-29A/B/C靶向上调基因。此外,VCAM1参与白细胞跨内皮迁移途径。在验证分析中,GSE75436和GSE54083之间,有444个上调和543个下调的共存DEG,以及11个涉及白细胞跨内皮迁移途径的共存基因。VCAM1、TNF、CTSS、IL10、IL1B、IL6和miR-29A/B/C可能是IA形成和发展的潜在生物标志物。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验