西伯利亚鲟多组织参考转录组数据库。
Siberian sturgeon multi-tissue reference transcriptome database.
机构信息
SIGENAE, Genotoul Bioinfo, MIAT UR875, INRAe, Chemin de Borde-Rouge - Auzeville BP 52627, 31326 CASTANET-TOLOSAN CEDEX, France.
SIGENAE, GenPhySE, Université de Toulouse, INRAe, ENVT, Chemin de Borde-Rouge - Auzeville BP 52627, 31326 CASTANET-TOLOSAN CEDEX, France.
出版信息
Database (Oxford). 2020 Nov 25;2020. doi: 10.1093/database/baaa082.
MOTIVATION
Siberian sturgeon is a long lived and late maturing fish farmed for caviar production in 50 countries. Functional genomics enable to find genes of interest for fish farming. In the absence of a reference genome, a reference transcriptome is very useful for sequencing based functional studies.
RESULTS
We present here a high-quality transcriptome assembly database built using RNA-seq reads coming from brain, pituitary, gonadal, liver, stomach, kidney, anterior kidney, heart, embryonic and pre-larval tissues. It will facilitate crucial research on topics such as puberty, reproduction, growth, food intake and immunology. This database represents a major contribution to the publicly available sturgeon transcriptome reference datasets.
AVAILABILITY
The database is publicly available at http://siberiansturgeontissuedb.sigenae.org Supplementary information: Supplementary data are available at Database online.
动机
西伯利亚鲟是一种长寿且晚熟的鱼类，被 50 个国家养殖用于生产鱼子酱。功能基因组学使我们能够找到对鱼类养殖有兴趣的基因。在缺乏参考基因组的情况下，参考转录组对于基于测序的功能研究非常有用。
结果
我们在这里展示了一个高质量的转录组组装数据库，该数据库是使用来自脑、垂体、性腺、肝、胃、肾、前肾、心脏、胚胎和幼体组织的 RNA-seq reads 构建的。它将促进有关青春期、繁殖、生长、食物摄入和免疫学等主题的重要研究。该数据库是对公开可用的鲟鱼转录组参考数据集的重大贡献。
可用性
该数据库可在 http://siberiansturgeontissuedb.sigenae.org 上公开获取。
补充信息
补充数据可在在线数据库中获得。
Zotero 插件