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1,5-二取代四唑作为癌症中存在的两种蛋白质(ABL和突变型T315I激酶)抑制剂的分子对接和药效团建模

Molecular docking and pharmacophoric modelling of 1,5-disubstituted tetrazoles as inhibitors of two proteins present in cancer, the ABL and the mutated T315I kinase.

作者信息

Díaz-Cervantes Erik, Cortés-García Carlos J, Chacón-García Luis, Suárez-Castro Abel

机构信息

Departamento de Alimentos, Centro Interdisciplinario del Noreste (CINUG), Universidad de Guanajuato, 37975 Tierra Blanca, Guanajuato Mexico.

Laboratorio de Diseño Molecular, Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Ciudad Universitaria, C.P. 58033 Morelia, Michoacán Mexico.

出版信息

In Silico Pharmacol. 2020 Nov 22;8(1):6. doi: 10.1007/s40203-020-00059-6. eCollection 2020.

Abstract

A docking study of a set of several 1,5-disubstituted tetrazoles compounds has been performed to predict the poses of some potential inhibitors of the Abelson tyrosine-protein kinase and the mutated Abelson tyrosine-protein kinase T315I. The study was conducted through Lamarckian genetic algorithms in Autodock4 package. Bayesian calculations were performed; specificity and sensitivity values as well as positive predicted values, and negative predicted values were calculated using a set of 99 known experimentally active ligands and 385 decoys for the Abelson tyrosine-protein kinase from the Directory of Useful Decoys database. Root mean square deviation values were calculated though the X-ray crystallographic data of the bioactive pose of imatinib as reference, and the pose obtained with the above methods. The obtained results show the importance of the protein interactions with the halogens present in some of these 1,5-disubstituted tetrazoles ligands, as well as the presence of some hydrophobic fragments, obtained via the pharmacophoric model, concluding that the eight novels 1,5-disubstituted tetrazoles compounds herein identified, could be effective inhibitors of Abelson tyrosine-protein kinase, using a docking calculations.

摘要

已对一组几种1,5 - 二取代四唑化合物进行对接研究,以预测一些潜在的阿贝尔森酪氨酸蛋白激酶和突变型阿贝尔森酪氨酸蛋白激酶T315I抑制剂的构象。该研究通过Autodock4软件包中的拉马克遗传算法进行。进行了贝叶斯计算;使用来自有用诱饵数据库目录中的一组99种已知实验活性配体和385种阿贝尔森酪氨酸蛋白激酶诱饵,计算特异性和敏感性值以及阳性预测值和阴性预测值。以伊马替尼生物活性构象的X射线晶体学数据为参考,计算上述方法获得的构象的均方根偏差值。所得结果表明蛋白质与这些1,5 - 二取代四唑配体中某些卤素的相互作用以及通过药效团模型获得的一些疏水片段的存在的重要性,得出结论,通过对接计算,本文鉴定的八种新型1,5 - 二取代四唑化合物可能是阿贝尔森酪氨酸蛋白激酶的有效抑制剂。

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