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DFT 和 IsoStar 分析评估 σ-和 π-空穴相互作用在晶体工程中的应用。

DFT and IsoStar Analyses to Assess the Utility of σ- and π-Hole Interactions for Crystal Engineering.

机构信息

van 't Hoff Institute for Molecular Sciences, Universiteit van Amsterdam, Science Park 904, 1098 XH, Amsterdam, The Netherlands.

出版信息

Chemphyschem. 2021 Jan 18;22(2):141-153. doi: 10.1002/cphc.202000927. Epub 2020 Dec 22.

DOI:10.1002/cphc.202000927
PMID:33241585
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7898519/
Abstract

The interpretation of 36 charge neutral 'contact pairs' from the IsoStar database was supported by DFT calculations of model molecules 1-12, and bimolecular adducts thereof. The 'central groups' are σ-hole donors (H O and aromatic C-I), π-hole donors (R-C(O)Me, R-NO and R-C F ) and for comparison R-C H (R=any group or atom). The 'contact groups' are hydrogen bond donors X-H (X=N, O, S, or R C, or R C) and lone-pair containing fragments (R C-F, R-C≡N and R C=O). Nearly all the IsoStar distributions follow expectations based on the electrostatic potential of the 'central-' and 'contact group'. Interaction energies (ΔE ) are dominated by electrostatics (particularly between two polarized molecules) or dispersion (especially in case of large contact area). Orbital interactions never dominate, but could be significant (∼30 %) and of the n/π→σ*/π* kind. The largest degree of directionality in the IsoStar plots was typically observed for adducts more stable than ΔE ≈-4 kcal⋅mol , which can be seen as a benchmark-value for the utility of an interaction in crystal engineering. This benchmark could be met with all the σ- and π-hole donors studied.

摘要

从 IsoStar 数据库中选择了 36 对中性“接触对”进行了诠释,其解释依据是对模型分子 1-12 及其双分子加合物的 DFT 计算。“中心基团”是 σ-hole 供体(H O 和芳香族 C-I)、π-hole 供体(R-C(O)Me、R-NO 和 R-C F ),并进行了 R-C H (R=任何基团或原子)的对比。“接触基团”是氢键供体 X-H(X=N、O、S 或 R C 或 R C )和含有孤对电子的片段(R C-F、R-C≡N 和 R C=O)。几乎所有的 IsoStar 分布都符合基于“中心-”和“接触组”静电势的预期。相互作用能(ΔE )主要由静电(特别是在两个极化分子之间)或色散(特别是在接触面积较大的情况下)决定。轨道相互作用从未占主导地位,但可能具有重要意义(∼30%),并且属于 n/π→σ*/π*类型。在 IsoStar 图中,通常观察到方向性最大的是比 ΔE ≈-4 kcal⋅mol 更稳定的加合物,这可以作为晶体工程中相互作用有用性的基准值。所有研究的 σ-和 π-hole 供体都可以达到该基准值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/1c7e39f480cc/CPHC-22-141-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/94a766e81436/CPHC-22-141-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/4efea9a0635d/CPHC-22-141-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/b31237e0d366/CPHC-22-141-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/0a4879f84c26/CPHC-22-141-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/b3d99ad23a6d/CPHC-22-141-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/14ac45075b02/CPHC-22-141-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/036cfda03e1b/CPHC-22-141-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/1c7e39f480cc/CPHC-22-141-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/94a766e81436/CPHC-22-141-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/4efea9a0635d/CPHC-22-141-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/b31237e0d366/CPHC-22-141-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/0a4879f84c26/CPHC-22-141-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/b3d99ad23a6d/CPHC-22-141-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/14ac45075b02/CPHC-22-141-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/036cfda03e1b/CPHC-22-141-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a9d6/7898519/1c7e39f480cc/CPHC-22-141-g008.jpg

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