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受海洋南极洲欺骗岛时间梯度上非生物变化驱动的微生物应激反应动态。

Dynamics of microbial stress responses driven by abiotic changes along a temporal gradient in Deception Island, Maritime Antarctica.

机构信息

Microbial Resources Division, Research Center for Chemistry, Biology, and Agriculture (CPQBA), State University of Campinas - UNICAMP, Paulínia, SP CEP 13081-970, Brazil; Biology Institute, State University of Campinas - UNICAMP, Campinas, SP CEP: 13083-862, Brazil.

Microbial Resources Division, Research Center for Chemistry, Biology, and Agriculture (CPQBA), State University of Campinas - UNICAMP, Paulínia, SP CEP 13081-970, Brazil; Brazilian Agricultural Research Corporation - EMBRAPA, Jaguariúna, SP CEP 13820-000, Brazil.

出版信息

Sci Total Environ. 2021 Mar 1;758:143671. doi: 10.1016/j.scitotenv.2020.143671. Epub 2020 Nov 21.

Abstract

Whalers Bay (WB), Deception Island, is an environment that can drastically change its temperature within a few meters. The main forms of life inhabiting this environment are microorganisms, which, due to the high diversity and their adaptive potential, can survive and thrive under harsh stress conditions. However, the genetic potential and mechanisms to cope with fluctuating adverse conditions as well as what extent environmental variations shape the microbial community over the years it is still unknown in Antarctic environments. In this work, sediments collected in a transect in Whalers Bay, Deception Island, during the Austral Summers of 2014, 2015 and 2017 were analyzed using shotgun metagenomics. Sequence data were further processed with the SqueezeMeta tool for assembly, gene prediction, mapping, taxonomic and functional annotations. Results showed that stress-related functions had the influence of temperatures and solar radiation observed in the years of 2015 and 2017. The most differentiated functions were the ones related to oxidative stress, comparing 2014 vs 2015 and 2014 vs 2017. The genes coding for HSP20 and oxidoreductases (nrdH, grxA, korC and korD), as well as the genes clpE, cspL, and operons mtrAB and vicKR, were differentially enriched between the years, most of them found in gram-positive bacteria. The selective pressures of temperature and radiation may have favored the growth of gram-positive bacteria in 2017, with emphasis on Arthrobacter genus. Data gathered in this work showed that temperature and solar radiation could potentially be the primary driving forces shaping the repertoire of stress-response genes for the maintenance of microbial diversity in WB Antarctic sediments.

摘要

鲸鱼湾(WB),欺骗岛,是一个温度在几米内就会发生剧烈变化的环境。栖息在这个环境中的主要生命形式是微生物,由于其高度的多样性和适应潜力,它们可以在恶劣的压力条件下生存和繁殖。然而,在南极环境中,我们还不知道微生物群落的遗传潜力和应对波动不利条件的机制,以及环境变化在多年来对其产生的影响程度。在这项工作中,使用鸟枪法宏基因组学分析了 2014 年、2015 年和 2017 年南极夏季在欺骗岛鲸鱼湾采集的一条横截线上的沉积物。使用 SqueezeMeta 工具对序列数据进行了进一步处理,用于组装、基因预测、映射、分类和功能注释。结果表明,与温度和太阳辐射有关的功能受到了 2015 年和 2017 年的影响。最具区别性的功能是与氧化应激有关的功能,比较 2014 年与 2015 年和 2014 年与 2017 年。编码 HSP20 和氧化还原酶(nrdH、grxA、korC 和 korD)的基因,以及 clpE、cspL 和 mtrAB 和 vicKR 操纵子,在不同年份之间存在差异丰度,其中大多数存在于革兰氏阳性菌中。温度和辐射的选择压力可能有利于 2017 年革兰氏阳性菌的生长,重点是节杆菌属。这项工作中收集的数据表明,温度和太阳辐射可能是塑造 WB 南极沉积物中应激反应基因库以维持微生物多样性的主要驱动力。

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