UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
Max Planck Institute for the Science of Human History, Kahlaische Strasse 10, 07745 Jena, Germany.
Philos Trans R Soc Lond B Biol Sci. 2021 Jan 18;376(1816):20190723. doi: 10.1098/rstb.2019.0723. Epub 2020 Nov 30.
Large anthropogenic C datasets are widely used to generate summed probability distributions (SPDs) as a proxy for past human population levels. However, SPDs are a poor proxy when datasets are small, bearing little relationship to true population dynamics. Instead, more robust inferences can be achieved by directly modelling the population and assessing the model likelihood given the data. We introduce the R package ADMUR which uses a continuous piecewise linear (CPL) model of population change, calculates the model likelihood given a C dataset, estimates credible intervals using Markov chain Monte Carlo, applies a goodness-of-fit test, and uses the Schwarz Criterion to compare CPL models. We demonstrate the efficacy of this method using toy data, showing that spurious dynamics are avoided when sample sizes are small, and true population dynamics are recovered as sample sizes increase. Finally, we use an improved C dataset for the South American Arid Diagonal to compare CPL modelling to current simulation methods, and identify three Holocene phases when population trajectory estimates changed from rapid initial growth of 4.15% per generation to a decline of 0.05% per generation between 10 821 and 7055 yr BP, then gently grew at 0.58% per generation until 2500 yr BP. This article is part of the theme issue 'Cross-disciplinary approaches to prehistoric demography'.
大型人为 C 数据集被广泛用于生成总和概率分布 (SPD),作为过去人类人口水平的替代指标。然而,当数据集较小时,SPD 是一个很差的替代指标,与真实的人口动态几乎没有关系。相反,通过直接对人口进行建模并根据数据评估模型似然度,可以得出更稳健的推论。我们引入了 R 包 ADMUR,它使用人口变化的连续分段线性 (CPL) 模型,根据 C 数据集计算模型似然度,使用马尔可夫链蒙特卡罗估计置信区间,应用拟合优度检验,并使用 Schwarz 准则比较 CPL 模型。我们使用玩具数据证明了这种方法的有效性,表明当样本量较小时可以避免虚假动态,并且随着样本量的增加可以恢复真实的人口动态。最后,我们使用改进的南美干旱对角 C 数据集将 CPL 建模与当前的模拟方法进行比较,并确定了三个全新世阶段,在这三个阶段中,人口轨迹估计从每代 4.15%的快速初始增长转变为 10821 至 7055 年前每代 0.05%的下降,然后在 2500 年前以每代 0.58%的速度缓慢增长。本文是“史前人口学的跨学科方法”主题问题的一部分。