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差异表达分析揭示CLCA1是结直肠癌的预后和诊断生物标志物。

Differential Expression Analysis Revealing CLCA1 to Be a Prognostic and Diagnostic Biomarker for Colorectal Cancer.

作者信息

Wei Fang-Ze, Mei Shi-Wen, Wang Zhi-Jie, Chen Jia-Nan, Shen Hai-Yu, Zhao Fu-Qiang, Li Juan, Liu Zheng, Liu Qian

机构信息

Department of Colorectal Surgery, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union College, Beijing, China.

出版信息

Front Oncol. 2020 Oct 28;10:573295. doi: 10.3389/fonc.2020.573295. eCollection 2020.

Abstract

Colorectal cancer (CRC) is a common malignant tumor of the digestive tract and lacks specific diagnostic markers. In this study, we utilized 10 public datasets from the NCBI Gene Expression Omnibus (NCBI-GEO) database to identify a set of significantly differentially expressed genes (DEGs) between tumor and control samples and WGCNA (Weighted Gene Co-Expression Network Analysis) to construct gene co-expression networks incorporating the DEGs from The Cancer Genome Atlas (TCGA) and then identify genes shared between the GEO datasets and key modules. Then, these genes were screened MCC to identify 20 hub genes. We utilized regression analyses to develop a prognostic model and utilized the random forest method to validate. All hub genes had good diagnostic value for CRC, but only CLCA1 was related to prognosis. Thus, we explored the potential biological value of CLCA1. The results of gene set enrichment analysis (GSEA) and immune infiltration analysis showed that CLCA1 was closely related to tumor metabolism and immune invasion of CRC. These analysis results revealed that CLCA1 may be a candidate diagnostic and prognostic biomarker for CRC.

摘要

结直肠癌(CRC)是一种常见的消化道恶性肿瘤,且缺乏特异性诊断标志物。在本研究中,我们利用来自NCBI基因表达综合数据库(NCBI-GEO)的10个公开数据集,以鉴定肿瘤样本与对照样本之间一组显著差异表达基因(DEGs),并采用加权基因共表达网络分析(WGCNA)构建包含来自癌症基因组图谱(TCGA)的DEGs的基因共表达网络,进而鉴定GEO数据集与关键模块之间共享的基因。然后,通过计算最大信息系数(MCC)筛选这些基因,以鉴定出20个核心基因。我们利用回归分析建立了一个预后模型,并采用随机森林方法进行验证。所有核心基因对CRC均具有良好的诊断价值,但只有钙激活氯离子通道蛋白1(CLCA1)与预后相关。因此,我们探究了CLCA1的潜在生物学价值。基因集富集分析(GSEA)和免疫浸润分析结果表明,CLCA1与CRC的肿瘤代谢和免疫侵袭密切相关。这些分析结果表明,CLCA1可能是CRC的一个候选诊断和预后生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b91f/7673386/bcfa2c04e409/fonc-10-573295-g001.jpg

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