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4D 核组建模。

4D nucleome modeling.

机构信息

CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Baldiri i Reixac 4, 08028 Barcelona, Spain.

EVOGENE, Department of Biosciences, Faculty of Natural Sciences, University of Oslo, 0316 Oslo, Norway.

出版信息

Curr Opin Genet Dev. 2021 Apr;67:25-32. doi: 10.1016/j.gde.2020.10.004. Epub 2020 Nov 27.

Abstract

The intrinsic dynamic nature of chromosomes is emerging as a fundamental component in regulating DNA transcription, replication, and damage-repair among other nuclear functions. With this increased awareness, reinforced over the last ten years, many new experimental techniques, mainly based on microscopy and chromosome conformation capture, have been introduced to study the genome in space and time. Owing to the increasing complexity of these cutting-edge techniques, computational approaches have become of paramount importance to interpret, contextualize, and complement such experiments with new insights. Hence, it is becoming crucial for experimental biologists to have a clear understanding of the diverse theoretical modeling approaches available and the biological information each of them can provide.

摘要

染色体的内在动态性质正在成为调节 DNA 转录、复制和损伤修复等核功能的基本组成部分。在过去十年中,随着人们对此认识的不断增强,许多新的实验技术,主要基于显微镜和染色体构象捕获,已经被引入到研究基因组的空间和时间结构中。由于这些前沿技术的复杂性不断增加,计算方法对于解释、上下文理解和用新的见解补充这些实验变得至关重要。因此,实验生物学家清楚地了解可用的各种理论建模方法以及它们各自可以提供的生物学信息变得至关重要。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5ff0/8098745/46365800b0dd/gr1.jpg

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