Université de Lyon, ENS de Lyon, Univ Claude Bernard, CNRS, Laboratory of Biology and Modeling of the Cell, 46 Allée d'Italie, 69007 Lyon, France.
Université de Lyon, ENS de Lyon, Univ Claude Bernard, CNRS, Laboratory of Biology and Modeling of the Cell, 46 Allée d'Italie, 69007 Lyon, France.
Curr Opin Genet Dev. 2020 Apr;61:37-43. doi: 10.1016/j.gde.2020.03.001. Epub 2020 Apr 15.
The dynamic nature of chromosome organization plays a central role in the regulation of many crucial processes, such as DNA transcription and replication. However, the molecular bases of the link between genomic function, structure and dynamics remain elusive. In this review, we focus on how biophysical modelling can be instrumentally used to rationalize experimental studies of chromosome dynamics, and to probe the impact of putative mechanisms on genome folding kinetics during interphase. We introduce the general connection between chromatin internal organization and dynamics, and outline the potential effects of passive interactions mediated by architectural proteins and of active, energy-dependent processes on chromatin motion. Finally, we discuss current ambiguities emerging from in vivo observations, in particular related to ATP depletion and transcriptional activation, and highlight future perspectives.
染色体组织的动态特性在调节许多关键过程中起着核心作用,如 DNA 转录和复制。然而,基因组功能、结构和动力学之间联系的分子基础仍然难以捉摸。在这篇综述中,我们专注于生物物理建模如何能够有助于合理化染色体动力学的实验研究,并探测假定机制对间期基因组折叠动力学的影响。我们介绍了染色质内部组织和动力学之间的一般联系,并概述了结构蛋白介导的被动相互作用以及主动、能量依赖过程对染色质运动的潜在影响。最后,我们讨论了从体内观察中出现的当前模糊性,特别是与 ATP 耗竭和转录激活有关的模糊性,并强调了未来的观点。