Ali Hafiz Saqib, Higham Jonathan, Henchman Richard H
Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, UK.
School of Chemistry, The University of Manchester, Oxford Road, Manchester M13 9PL, UK.
Entropy (Basel). 2019 Jul 31;21(8):750. doi: 10.3390/e21080750.
Accurately calculating the entropy of liquids is an important goal, given that many processes take place in the liquid phase. Of almost equal importance is understanding the values obtained. However, there are few methods that can calculate the entropy of such systems, and fewer still to make sense of the values obtained. We present our multiscale cell correlation (MCC) method to calculate the entropy of liquids from molecular dynamics simulations. The method uses forces and torques at the molecule and united-atom levels and probability distributions of molecular coordinations and conformations. The main differences with previous work are the consistent treatment of the mean-field cell approximation to the approriate degrees of freedom, the separation of the force and torque covariance matrices, and the inclusion of conformation correlation for molecules with multiple dihedrals. MCC is applied to a broader set of 56 important industrial liquids modeled using the Generalized AMBER Force Field (GAFF) and Optimized Potentials for Liquid Simulations (OPLS) force fields with 1.14*CM1A charges. Unsigned errors versus experimental entropies are 8.7 J K - 1 mol - 1 for GAFF and 9.8 J K - 1 mol - 1 for OPLS. This is significantly better than the 2-Phase Thermodynamics method for the subset of molecules in common, which is the only other method that has been applied to such systems. MCC makes clear why the entropy has the value it does by providing a decomposition in terms of translational and rotational vibrational entropy and topographical entropy at the molecular and united-atom levels.
鉴于许多过程发生在液相中,准确计算液体的熵是一个重要目标。理解所获得的值几乎同样重要。然而,能够计算此类系统熵的方法很少,而能够理解所获值的方法更是少之又少。我们提出了多尺度单元关联(MCC)方法,用于从分子动力学模拟中计算液体的熵。该方法使用分子和联合原子水平的力和扭矩以及分子配位和构象的概率分布。与先前工作的主要区别在于对适当自由度的平均场单元近似进行了一致处理,分离了力和扭矩协方差矩阵,并纳入了具有多个二面角的分子的构象相关性。MCC应用于使用广义琥珀色力场(GAFF)和液体模拟优化势(OPLS)力场以及1.14*CM1A电荷建模的56种重要工业液体的更广泛集合。GAFF的无符号误差与实验熵相比为8.7 J K - 1 mol - 1,OPLS为9.8 J K - 1 mol - 1。这明显优于对共同分子子集的两相热力学方法,这是唯一应用于此类系统的其他方法。MCC通过在分子和联合原子水平上提供平动、转动振动熵和地形熵方面的分解,明确解释了熵为何具有其值。