Pigni Natalia B, Clark Kevin L, Beck Warren F, Gascón José A
Department of Chemistry, University of Connecticut, Storrs, Connecticut 06269-3060, United States.
Instituto de Ciencia y Tecnología de Alimentos Córdoba (ICYTAC-CONICET), Ciudad Universitaria, Córdoba X5000HUA, Argentina.
J Phys Chem B. 2020 Dec 17;124(50):11387-11395. doi: 10.1021/acs.jpcb.0c08756. Epub 2020 Dec 8.
The orange carotenoid protein (OCP) is involved in the photoprotective processes in cyanobacteria via nonphotochemical quenching. Triggered by blue-green light absorption, the carotenoid chromophore undergoes translocation, displacing around 12 Å from the C-terminal domain (CTD) to the N-terminal domain (NTD). The detailed molecular rearrangements that occur within the carotenoid and the protein during this process remain largely elusive. By using a combination of molecular dynamics, well-tempered metadynamics, and hybrid quantum mechanical/molecular mechanical (QM/MM) calculations, we were able to mimic the translocation of the carotenoid from the inactive OCP and obtain metastable red-shifted states in the photoactivation mechanism, replicating the λ values of reference experimental spectra. In addition, our simulations give insight into the structure of the red-shifted form of the inactive state of OCP.
橙色类胡萝卜素蛋白(OCP)通过非光化学猝灭参与蓝藻的光保护过程。在吸收蓝绿光的触发下,类胡萝卜素发色团发生移位,从C端结构域(CTD)向N端结构域(NTD)位移约12埃。在此过程中,类胡萝卜素和蛋白质内部发生的详细分子重排仍 largely难以捉摸。通过结合分子动力学、加权元动力学和混合量子力学/分子力学(QM/MM)计算,我们能够模拟类胡萝卜素从无活性OCP的移位,并在光激活机制中获得亚稳态红移状态,重现参考实验光谱的λ值。此外,我们的模拟深入了解了OCP无活性状态红移形式的结构。