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甘油磷酸脱氢酶催化的氢化物转移:募集酸性氨基酸侧链以挽救受损的酶。

Hydride Transfer Catalyzed by Glycerol Phosphate Dehydrogenase: Recruitment of an Acidic Amino Acid Side Chain to Rescue a Damaged Enzyme.

机构信息

Department of Chemistry, University at Buffalo, The State University of New York at Buffalo, Buffalo, New York 14260-3000, United States.

出版信息

Biochemistry. 2020 Dec 29;59(51):4856-4863. doi: 10.1021/acs.biochem.0c00801. Epub 2020 Dec 11.

Abstract

K120 of glycerol 3-phosphate dehydrogenase (GPDH) lies close to the carbonyl group of the bound dihydroxyacetone phosphate (DHAP) dianion. pH rate (pH 4.6-9.0) profiles are reported for and (/) for wild type and K120A GPDH-catalyzed reduction of DHAP by NADH, and for (/) for activation of the variant-catalyzed reduction by CHCHNH, where and are apparent dissociation constants for CHCHNH and DHAP, respectively. These profiles provide evidence that the K120 side chain cation, which is stabilized by an ion-pairing interaction with the D260 side chain, remains protonated between pH 4.6 and 9.0. The profiles for wild type and K120A variant GPDH show downward breaks at a similar pH value (7.6) that are attributed to protonation of the K204 side chain, which also lies close to the substrate carbonyl oxygen. The pH profiles for (/) and (/) for the K120A variant show that the monoprotonated form of the variant is activated for catalysis by CHCHNH but has no detectable activity, compared to the diprotonated variant, for unactivated reduction of DHAP. The pH profile for shows that the monoprotonated K120A variant is active toward reduction of enzyme-bound DHAP, because of activation by a ligand-driven conformational change. Upward breaks in the pH profiles for and (/) for K120A GPDH are attributed to protonation of D260. These breaks are consistent with the functional replacement of K120 by D260, and a plasticity in the catalytic roles of the active site side chains.

摘要

甘油-3-磷酸脱氢酶(GPDH)的 K120 位于结合态二羟丙酮磷酸(DHAP)二阴离子的羰基附近。报道了野生型和 K120A GPDH 催化的 NADH 还原 DHAP 以及 CHCHNH 激活变体催化还原的 pH 速率(pH 4.6-9.0)曲线,其中 和 分别为 CHCHNH 和 DHAP 的表观离解常数。这些曲线为 K120 侧链阳离子提供了证据,该阳离子通过与 D260 侧链的离子对相互作用稳定,在 pH 4.6 到 9.0 之间保持质子化状态。野生型和 K120A 变体 GPDH 的曲线在相似的 pH 值(7.6)处出现向下的断裂,这归因于 K204 侧链的质子化,该侧链也靠近底物羰基氧。K120A 变体的 和 曲线表明,变体的单质子化形式通过 CHCHNH 激活,但与未激活的 DHAP 还原相比,没有检测到活性。K120A 变体的 曲线表明,由于配体驱动的构象变化的激活,单质子化的 K120A 变体对酶结合的 DHAP 的还原具有活性。K120A GPDH 的 和 曲线的向上断裂归因于 D260 的质子化。这些断裂与 K120 被 D260 功能替代以及活性位点侧链的催化作用的可塑性一致。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7c5c/7784668/a1c00e4c71db/bi0c00801_0004.jpg

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