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腺苷同型半胱氨酸水解酶:具有两个 Rossmann 折叠结构域的酶的结构视角。

-adenosyl-l-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains.

机构信息

Laboratory of Structural Microbiology, Institute of Bioorganic Chemistry, Polish Academy of Sciences, Noskowskiego 12/14, 61-704 Poznan, Poland.

出版信息

Biomolecules. 2020 Dec 16;10(12):1682. doi: 10.3390/biom10121682.

Abstract

-adenosyl-l-homocysteine hydrolase (SAHase) is a major regulator of cellular methylation reactions that occur in eukaryotic and prokaryotic organisms. SAHase activity is also a significant source of l-homocysteine and adenosine, two compounds involved in numerous vital, as well as pathological processes. Therefore, apart from cellular methylation, the enzyme may also influence other processes important for the physiology of particular organisms. Herein, presented is the structural characterization and comparison of SAHases of eukaryotic and prokaryotic origin, with an emphasis on the two principal domains of SAHase subunit based on the Rossmann motif. The first domain is involved in the binding of a substrate, e.g., -adenosyl-l-homocysteine or adenosine and the second domain binds the NAD cofactor. Despite their structural similarity, the molecular interactions between an adenosine-based ligand molecule and macromolecular environment are different in each domain. As a consequence, significant differences in the conformation of d-ribofuranose rings of nucleoside and nucleotide ligands, especially those attached to adenosine moiety, are observed. On the other hand, the chemical nature of adenine ring recognition, as well as an orientation of the adenine ring around the -glycosidic bond are of high similarity for the ligands bound in the substrate- and cofactor-binding domains.

摘要

腺苷同型半胱氨酸水解酶(SAHase)是真核生物和原核生物中细胞甲基化反应的主要调节剂。SAHase 活性也是 L-同型半胱氨酸和腺苷的重要来源,这两种化合物参与了许多重要的生理和病理过程。因此,除了细胞甲基化,该酶还可能影响特定生物体生理过程中的其他重要过程。本文对真核生物和原核生物来源的 SAHase 进行了结构特征分析和比较,重点介绍了基于 Rossmann 模体的 SAHase 亚基的两个主要结构域。第一个结构域参与底物的结合,例如 -腺苷-L-同型半胱氨酸或腺苷,第二个结构域结合 NAD 辅因子。尽管它们的结构相似,但碱基配体分子与每个结构域的大分子环境之间的分子相互作用是不同的。因此,核苷和核苷酸配体的 d-核糖呋喃糖环的构象,尤其是与腺苷部分相连的 d-核糖呋喃糖环的构象,存在显著差异。另一方面,对结合在底物结合和辅因子结合结构域中的配体,腺嘌呤环的化学性质识别以及腺嘌呤环围绕糖苷键的取向具有高度相似性。

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