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用于声学惊吓波形分类的机器学习、波形预处理和特征提取方法。

Machine learning, waveform preprocessing and feature extraction methods for classification of acoustic startle waveforms.

作者信息

Fawcett Timothy J, Cooper Chad S, Longenecker Ryan J, Walton Joseph P

机构信息

Global Center for Hearing and Speech Research, University of South Florida, Tampa, FL, United States.

Research Computing, University of South Florida, Tampa, FL, United States.

出版信息

MethodsX. 2020 Dec 1;8:101166. doi: 10.1016/j.mex.2020.101166. eCollection 2021.

DOI:10.1016/j.mex.2020.101166
PMID:33354518
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7744771/
Abstract

The acoustic startle response (ASR) is an involuntary muscle reflex that occurs in response to a transient loud sound and is a highly-utilized method of assessing hearing status in animal models. Currently, a high level of variability exists in the recording and interpretation of ASRs due to the lack of standardization for collecting and analyzing these measures. An ensembled machine learning model was trained to predict whether an ASR waveform is a startle or non-startle using highly-predictive features extracted from normalized ASR waveforms collected from young adult CBA/CaJ mice. Features were extracted from the normalized waveform as well as the power spectral density estimates and continuous wavelet transforms of the normalized waveform. Machine learning models utilizing methods from different families of algorithms were individually trained and then ensembled together, resulting in an extremely robust model.•ASR waveforms were normalized using the mean and standard deviation computed before the startle elicitor was presented•9 machine learning algorithms from 4 different families of algorithms were individually trained using features extracted from the normalized ASR waveforms•Trained machine learning models were ensembled to produce an extremely robust classifier.

摘要

听觉惊吓反应(ASR)是一种非自主的肌肉反射,它会在听到短暂的响亮声音时发生,是在动物模型中评估听力状态的一种高度常用的方法。目前,由于在收集和分析这些测量值方面缺乏标准化,ASR的记录和解释存在高度的变异性。使用从年轻成年CBA/CaJ小鼠收集的标准化ASR波形中提取的高度预测性特征,训练了一个集成机器学习模型,以预测ASR波形是惊吓反应还是非惊吓反应。特征从标准化波形以及标准化波形的功率谱密度估计和连续小波变换中提取。利用来自不同算法家族的方法的机器学习模型分别进行训练,然后组合在一起,从而得到一个极其强大的模型。

•在呈现惊吓诱发刺激之前,使用计算出的均值和标准差对ASR波形进行标准化

•使用从标准化ASR波形中提取的特征,分别训练来自4个不同算法家族的9种机器学习算法

•将训练好的机器学习模型组合起来,以产生一个极其强大的分类器。

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Provisional mapping of quantitative trait loci modulating the acoustic startle response and prepulse inhibition of acoustic startle.调节听觉惊吓反应及听觉惊吓前脉冲抑制的数量性状基因座的初步定位。
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Hear Res. 1998 Apr;118(1-2):101-13. doi: 10.1016/s0378-5955(98)00024-0.