Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, Univ Paris-Sud, Bâtiment 409, 91405, Orsay, France.
Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, Univ Paris-Sud, Bâtiment 409, 91405, Orsay, France.
Microbiol Res. 2021 Mar;244:126664. doi: 10.1016/j.micres.2020.126664. Epub 2020 Dec 5.
Desert-like areas located in the eastern portion of the state of Utah (USA) have geographic features that can resemble the surface of the planet Mars, characterized by red-colored hills, soils and sandstones. We examined the bacterial biodiversity of surface soil samples from several sites from the Colorado Plateau Desert in eastern Utah using pyrosequencing of PCR amplified bacterial 16S rRNA genes from total extracted soil DNA. The sample sites cover the Great Basin, Goblin Valley State Park and nearby regions on the Colorado Plateau. We also examined several physicochemical parameters of the soil samples to investigate any possible correlations between bacterial community structure and environmental drivers. The predominant bacterial phyla present in the samples were found to belong to members of the Proteobacteria, Actinobacteria, Bacteroidetes, and Gemmatimonadetes. The most abundant genera in our samples were found to belong to the Cesiribacter, Lysobacter, Adhaeribacter, Microvirga and Pontibacter genera. We found that the relative abundance of Proteobacteria and Gemmatimonadetes were significantly correlated with soil pH and a low concentration of organic matter, suggesting that, in these relatively high-altitude desert soils, these two parameters may be of primary importance to influence bacterial community composition.
位于美国犹他州东部的沙漠地区具有类似于火星表面的地理特征,其特点是红色的山丘、土壤和砂岩。我们使用从总提取土壤 DNA 中扩增的细菌 16S rRNA 基因的 PCR 焦磷酸测序,研究了来自犹他州东部科罗拉多高原沙漠的几个地点的地表土壤样本的细菌生物多样性。样本地点涵盖大盆地、 Goblin Valley 州立公园和科罗拉多高原附近地区。我们还检查了土壤样本的几个物理化学参数,以研究细菌群落结构与环境驱动因素之间是否存在任何可能的相关性。发现样本中存在的主要细菌门属于变形菌门、放线菌门、拟杆菌门和芽单胞菌门。在我们的样本中最丰富的属属于 Cesiribacter、Lysobacter、Adhaeribacter、Microvirga 和 Pontibacter 属。我们发现,变形菌门和芽单胞菌门的相对丰度与土壤 pH 值和低浓度的有机物呈显著正相关,这表明在这些相对高海拔的沙漠土壤中,这两个参数可能对影响细菌群落组成具有重要意义。