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缅因州沙漠(美国)矿质沙土表面的细菌群落。

Bacterial Communities on the Surface of the Mineral Sandy Soil from the Desert of Maine (USA).

机构信息

Institute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, Univ Paris-Sud, Bâtiment 409, 91405, Orsay, France.

Laboratoire de Géologie de Lyon, Université Claude Bernard Lyon-1, UMR5276, Lyon, France.

出版信息

Curr Microbiol. 2020 Aug;77(8):1429-1437. doi: 10.1007/s00284-020-01946-z. Epub 2020 Mar 19.

Abstract

The Desert of Maine, not a real desert, is a 160,000 m tourist attraction of glacial silt which resembles a desert, surrounded by a pine forest in the state of Maine located in the northeastern USA. Though not a true desert, the soil of the Desert of Maine has a sandy texture with poor water-holding abilities, nutrient retention capabilities, and a relatively low pH value (pH 5.09). Samples from this site may be of interest to examine the bacterial diversity present on mineral sandy loam soils with an acidic pH, low concentrations of organic materials though surrounded by a pine forest, and compare it with true desert soil microbial populations. Two surface sand samples from the Desert of Maine were obtained, and pyrosequencing of PCR amplified 16S rRNA genes from total extracted DNA was used to assess bacterial diversity, community structure, and the relative abundance of major bacterial taxa. We found that the soil samples from the Desert of Maine displayed high levels of bacterial diversity, with a predominance of members belonging to the Proteobacteria and Actinobacteria phyla. Bacteria from the most abundant genus, Acidiphilium, represent 12.5% of the total 16S rDNA sequences. In total, 1394 OTUs were observed in the two samples, with 668 OTUs being observed in both samples. By comparing Desert of Maine bacterial populations with studies on similar soil environments, we found that the samples contained less Acidobacteria than soils from acid soil forests, and less Firmicutes plus more Proteobacteria than oligotrophic desert soils. Interestingly, our samples were found to be highly similar in their composition to an oak forest soil in France.

摘要

缅因沙漠,不是真正的沙漠,是一个 16 万 m 的旅游胜地,由冰川淤泥构成,类似于沙漠,周围是美国东北部缅因州的一片松林。虽然不是真正的沙漠,但缅因沙漠的土壤质地为沙质,持水能力差,养分保持能力差,pH 值相对较低(pH5.09)。该地点的样本可能有助于研究具有酸性 pH 值、低有机物质浓度的矿质砂壤土上存在的细菌多样性,尽管周围是松林,但与真正的沙漠土壤微生物种群进行比较。从缅因沙漠获得了两个表面沙土样本,从总提取 DNA 中扩增的 16S rRNA 基因的焦磷酸测序用于评估细菌多样性、群落结构和主要细菌类群的相对丰度。我们发现,来自缅因沙漠的土壤样本显示出高水平的细菌多样性,其中优势属属于变形菌门和放线菌门。属于最丰富属的细菌 Acidiphilium 代表总 16S rDNA 序列的 12.5%。在两个样本中观察到总共 1394 个 OTUs,其中 668 个 OTUs 在两个样本中均被观察到。通过将缅因沙漠细菌种群与类似土壤环境的研究进行比较,我们发现与酸性土壤森林的土壤相比,样本中含有较少的酸杆菌,而含有较少的厚壁菌门加更多的变形菌门。有趣的是,我们的样本与法国的一片橡树林土壤在组成上非常相似。

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