REPIN and The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark; Structural Biology and NMR Laboratory, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
REPIN and The Linderstrøm-Lang Centre for Protein Science, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
J Biol Chem. 2021 Jan-Jun;296:100226. doi: 10.1074/jbc.REV120.012928. Epub 2020 Dec 29.
Hub proteins are central nodes in protein-protein interaction networks with critical importance to all living organisms. Recently, a new group of folded hub domains, the αα-hubs, was defined based on a shared αα-hairpin supersecondary structural foundation. The members PAH, RST, TAFH, NCBD, and HHD are found in large proteins such as Sin3, RCD1, TAF4, CBP, and harmonin, which organize disordered transcriptional regulators and membrane scaffolds in interactomes of importance to human diseases and plant quality. In this review, studies of structures, functions, and complexes across the αα-hubs are described and compared to provide a unified description of the group. This analysis expands the associated molecular concepts of "one domain-one binding site", motif-based ligand binding, and coupled folding and binding of intrinsically disordered ligands to additional concepts of importance to signal fidelity. These include context, motif reversibility, multivalency, complex heterogeneity, synergistic αα-hub:ligand folding, accessory binding sites, and supramodules. We propose that these multifaceted protein-protein interaction properties are made possible by the characteristics of the αα-hub fold, including supersite properties, dynamics, variable topologies, accessory helices, and malleability and abetted by adaptability of the disordered ligands. Critically, these features provide additional filters for specificity. With the presentations of new concepts, this review opens for new research questions addressing properties across the group, which are driven from concepts discovered in studies of the individual members. Combined, the members of the αα-hubs are ideal models for deconvoluting signal fidelity maintained by folded hubs and their interactions with intrinsically disordered ligands.
枢纽蛋白是蛋白质-蛋白质相互作用网络中的核心节点,对所有生物都具有至关重要的意义。最近,根据共享的αα-发夹超二级结构基础,定义了一组新的折叠枢纽结构域,即αα-枢纽。PAH、RST、TAFH、NCBD 和 HHD 成员存在于 Sin3、RCD1、TAF4、CBP 和 harmonin 等大型蛋白质中,它们在与人类疾病和植物质量相关的互作组中组织无序转录调节剂和膜支架。在这篇综述中,描述了αα-枢纽的结构、功能和复合物的研究,并进行了比较,以提供对该组的统一描述。这种分析扩展了与“一个结构域-一个结合位点”、基于基序的配体结合以及固有无序配体的折叠和结合相关的分子概念,增加了对信号保真度重要的其他概念。这些概念包括上下文、基序可逆性、多价性、复合物异质性、协同的αα-枢纽:配体折叠、辅助结合位点和超模块。我们提出,这些多方面的蛋白质-蛋白质相互作用特性是由αα-枢纽折叠的特性所决定的,包括超位特性、动力学、可变拓扑、辅助螺旋以及无序配体的可变形和适应性。至关重要的是,这些特性为特异性提供了额外的筛选。通过提出新概念,本综述为解决整个组的特性的新研究问题打开了大门,这些问题是由对个别成员的研究中发现的概念驱动的。综上所述,αα-枢纽的成员是解开由折叠枢纽及其与固有无序配体相互作用维持的信号保真度的理想模型。