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南极毛皮海狮的完整线粒体基因组()。

Complete mitochondrial genome of the Antarctic fur seal ().

作者信息

Nagel Rebecca, Forcada Jaume, Hoffman Joseph I

机构信息

Department of Animal Behaviour, Bielefeld University, Bielefeld, Germany.

British Antarctic Survey, Cambridge, UK.

出版信息

Mitochondrial DNA B Resour. 2019 Sep 6;4(2):2936-2937. doi: 10.1080/23802359.2019.1662751.

DOI:10.1080/23802359.2019.1662751
PMID:33365800
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7706844/
Abstract

The Antarctic fur seal () is an abundant Antarctic otariid. Here, we present the complete mitochondrial DNA sequence of this species, which includes 13 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and the control region for a total length of 16,156 bp. A phylogenetic analysis including all 25 publically available pinniped mitogenomes nested the Antarctic fur seal within the Otariid clade, which was clearly resolved from the Phocidae and Odobenidae.

摘要

南极毛皮海狮()是一种数量众多的南极海狗科动物。在此,我们展示了该物种完整的线粒体DNA序列,其包含13个蛋白质编码基因、22个转运RNA基因、2个核糖体RNA基因以及控制区,全长为16,156碱基对。一项包括所有25个公开可得的鳍脚类动物线粒体基因组的系统发育分析将南极毛皮海狮置于海狗科分支内,该分支与海豹科和海象科明显区分开来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b9b/7706844/1997ea0c2228/TMDN_A_1662751_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b9b/7706844/1997ea0c2228/TMDN_A_1662751_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0b9b/7706844/1997ea0c2228/TMDN_A_1662751_F0001_C.jpg

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本文引用的文献

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A draft fur seal genome provides insights into factors affecting SNP validation and how to mitigate them.一份海狗基因组草图为影响单核苷酸多态性(SNP)验证的因素以及如何缓解这些因素提供了见解。
Mol Ecol Resour. 2016 Jul;16(4):909-21. doi: 10.1111/1755-0998.12502. Epub 2016 Jan 20.
2
Climate change selects for heterozygosity in a declining fur seal population.气候变化导致衰退的海狗种群选择杂合性。
Nature. 2014 Jul 24;511(7510):462-5. doi: 10.1038/nature13542.
3
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.
RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
4
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
5
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.
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MITOS: improved de novo metazoan mitochondrial genome annotation.MITOS:改进的从头后生动物线粒体基因组注释。
Mol Phylogenet Evol. 2013 Nov;69(2):313-9. doi: 10.1016/j.ympev.2012.08.023. Epub 2012 Sep 7.
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