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中国特有的濒危藤本植物(夹竹桃科:萝摩亚科)的完整叶绿体基因组

Complete chloroplast genome of (Apocynaceae: Asclepiadoideae), an endangered liana endemic to China.

作者信息

Xiong Wujian, Lee Shiou Yih, Liu Panpan, You Wenhui, Liao Wenbo

机构信息

Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, PR China.

State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, PR China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 16;4(2):3608-3609. doi: 10.1080/23802359.2019.1674714.

DOI:10.1080/23802359.2019.1674714
PMID:33366106
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707277/
Abstract

is an endangered liana species endemic to China. Habitat destruction coupled with difficulties in natural pollination has reduced its population size over time. As present studies have focussed more on breeding programmes instead of molecular aspects, here we reported on the complete chloroplast (cp) genome sequence of . The cp genome is 161,280 bp in size and includes two inverted repeat (IR) regions of 24,884 bp each, which is separated by a large-single copy (LSC) region of 92,084 bp and a small-single copy (SSC) region of 19,428 bp. A total of 131 genes were predicted, including 37 tRNA, 8 rRNA, and 86 protein-coding genes. Phylogenetic analysis showed that is clustered with other Apocynaceae species and sister to .

摘要

是中国特有的一种濒危藤本植物。随着时间的推移,栖息地破坏加上自然授粉困难,导致其种群数量减少。由于目前的研究更多地集中在育种计划而非分子方面,在此我们报道了[植物名称]的完整叶绿体(cp)基因组序列。该cp基因组大小为161,280 bp,包括两个各为24,884 bp的反向重复(IR)区域,它们被一个92,084 bp的大单拷贝(LSC)区域和一个19,428 bp的小单拷贝(SSC)区域隔开。共预测到131个基因,包括37个tRNA、8个rRNA和86个蛋白质编码基因。系统发育分析表明,[植物名称]与夹竹桃科的其他物种聚在一起,并与[另一植物名称]是姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8504/7707277/9dda60b9ac30/TMDN_A_1674714_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8504/7707277/9dda60b9ac30/TMDN_A_1674714_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8504/7707277/9dda60b9ac30/TMDN_A_1674714_F0001_B.jpg

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本文引用的文献

1
GeSeq - versatile and accurate annotation of organelle genomes.GeSeq - 细胞器基因组的多功能和准确注释。
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2
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.RAxML 版本 8:用于系统发育分析和大型系统发育后分析的工具。
Bioinformatics. 2014 May 1;30(9):1312-3. doi: 10.1093/bioinformatics/btu033. Epub 2014 Jan 21.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
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