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L.的完整叶绿体基因组及其系统发育位置。

The complete chloroplast genome of L. and its phylogenetic position.

作者信息

Yang Zhaoping, Liu Luxian

机构信息

College of Life Sciences, Tarim University, Alaer, P. R. China.

Key laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng, P. R. China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 21;4(2):3700-3701. doi: 10.1080/23802359.2019.1678435.

Abstract

, which belongs to Butomaceae, is a plant species typical of littoral communities of river and stream shores. Here, we reported and characterized the complete chloroplast (cp) genome of and analyzed its phylogenetic position based on the complete cp genome sequences of 10 species within the core Alimatales. The cp genome is 158,107 bp in length, which consists of a large single-copy region (LSC, 88,140 bp; GC content: 34.8%), a small single-copy region (SSC, 19,695 bp; GC content: 30.1%), and a pair of inverted repeat regions (IRs, 25,136 bp; GC content: 42.9%). It harbours 113 unique genes, including 79 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes with an overall GC content of 36.8%. The phylogeny inference showed that formed a high supported clade, which was sister to Alismataceae. This result was similar to the floral development from petaloid Alismatales, and also similar to the phylogenetic studies of Alismales based on 83 plastid genes, but with much higher bootstrap support.

摘要

它属于花蔺科,是一种典型的生长在河流和溪流岸边沿海群落的植物物种。在此,我们报道并描述了该植物的完整叶绿体(cp)基因组,并基于核心泽泻目10个物种的完整cp基因组序列分析了其系统发育位置。该cp基因组长度为158,107 bp,由一个大单拷贝区域(LSC,88,140 bp;GC含量:34.8%)、一个小单拷贝区域(SSC,19,695 bp;GC含量:30.1%)和一对反向重复区域(IRs,25,136 bp;GC含量:42.9%)组成。它包含113个独特基因,包括79个蛋白质编码基因、30个转运RNA基因和4个核糖体RNA基因,总体GC含量为36.8%。系统发育推断表明,该植物形成了一个得到高度支持的分支,是泽泻科的姐妹分支。这一结果与花瓣状泽泻目的花发育情况相似,也与基于83个质体基因的泽泻目系统发育研究相似,但自展支持度更高。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/975c/7707564/00867b345dae/TMDN_A_1678435_F0001_B.jpg

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