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(刘)柳杉的质体基因组序列

The plastid genome sequence of (Lec.) Liou.

作者信息

Ren Shulin, Song Yu, Zhao Meili, Xu Wenbin

机构信息

Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Yunnan, China.

Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 23;4(2):3711-3712. doi: 10.1080/23802359.2019.1679051.

DOI:10.1080/23802359.2019.1679051
PMID:33366155
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707612/
Abstract

(Lec.) Liou is a kind of medicinal plants belonging to the genus H. Liu, but is often confused with (Hand.-Mazz.) Kosterm. Here, the complete plastid sequence of the was determined. The length of the plastid genome is 150,584 bp with overall AT content of 61%. It exhibited a typical quadripartite structure comprising a large single copy region (LSC) of 91,887 bp, a small single copy region (SSC) of 18,443 bp, and a pair of inverted repeat regions (IRs) of 20,262 bp each. Maximum likelihood phylogenetic analysis with GTR + F+R2 model was performed using eighteen complete plastomes of the Lauraceae, which strongly supports the relationships: sisterhood of the and a clade containing and Liou.

摘要

(讲座)六驳木是一种属于六驳木属的药用植物,但常与(Hand.-Mazz.)Kosterm混淆。在此,测定了六驳木的完整质体序列。质体基因组长度为150,584 bp,总体AT含量为61%。它呈现出典型的四分体结构,包括一个91,887 bp的大单拷贝区域(LSC)、一个18,443 bp的小单拷贝区域(SSC)以及两个各为20,262 bp的反向重复区域(IR)。使用樟科的18个完整质体基因组,采用GTR+F+R2模型进行了最大似然系统发育分析,这有力地支持了以下关系:六驳木与包含(某植物)和六驳木的一个分支为姐妹关系。 (注:原文中部分植物名称未完整给出,翻译时保留原文形式)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70a7/7707612/096275afebdb/TMDN_A_1679051_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70a7/7707612/096275afebdb/TMDN_A_1679051_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/70a7/7707612/096275afebdb/TMDN_A_1679051_F0001_C.jpg

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本文引用的文献

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Evolutionary Comparisons of the Chloroplast Genome in Lauraceae and Insights into Loss Events in the Magnoliids.樟科叶绿体基因组的进化比较及对木兰类丢失事件的认识。
Genome Biol Evol. 2017 Sep 1;9(9):2354-2364. doi: 10.1093/gbe/evx180.
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