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(兰科)的完整叶绿体基因组。

The complete chloroplast genome of (Orchidaceae).

作者信息

Wu Xin-Yi, Li Ting-Zhang, Chen Gui-Zhen, Xu Qing, Pan Yun-Yun, Chen Li Jun

机构信息

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization, Shenzhen, China.

Shenzhen Key Laboratory for Orchid Conservation and Utilization, The National Orchid Conservation Centre of China, The Orchid Conservation and Research Centre of Shenzhen, Shenzhen, China.

出版信息

Mitochondrial DNA B Resour. 2019 Oct 25;4(2):3776-3777. doi: 10.1080/23802359.2019.1666049.

DOI:10.1080/23802359.2019.1666049
PMID:33366186
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7706476/
Abstract

Lindl is an epiphytic orchid with significant ornamental values. Here, we report the first complete chloroplast genome of . The complete chloroplast (cp) genome sequence of is 160,024 bp in length and consisted of two inverted repeats (IRs, 25,403 bp), which were separated by a large single copy region (LSC, 88,075 bp) and a small single copy region (SSC, 21,143 bp). The cp genome encoded 142 genes, of which 110 were unique genes (80 protein-coding genes, 26 tRNAs and 4 rRNAs). Phylogenetic analysis showed that clustered together with .

摘要

林德尔是一种具有重要观赏价值的附生兰花。在此,我们报道了……的首个完整叶绿体基因组。……的完整叶绿体(cp)基因组序列长度为160,024 bp,由两个反向重复序列(IRs,25,403 bp)组成,它们被一个大单拷贝区域(LSC,88,075 bp)和一个小单拷贝区域(SSC,21,143 bp)隔开。cp基因组编码142个基因,其中110个是独特基因(80个蛋白质编码基因、26个tRNA和4个rRNA)。系统发育分析表明,……与……聚集在一起。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed73/7706476/1ef0c58e1a9a/TMDN_A_1666049_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed73/7706476/1ef0c58e1a9a/TMDN_A_1666049_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed73/7706476/1ef0c58e1a9a/TMDN_A_1666049_F0001_B.jpg

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本文引用的文献

1
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
2
CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.CpGAVAS,一个整合的网络服务器,用于完全测序的叶绿体基因组序列的注释、可视化、分析和 GenBank 提交。
BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.
3
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.
Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
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A rapid bootstrap algorithm for the RAxML Web servers.一种用于RAxML网络服务器的快速自引导算法。
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