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下一代测序技术获得了中国一种易危兰花的完整叶绿体基因组。

Next-generation sequencing yields the complete chloroplast genome of , a vulnerable orchid in China.

作者信息

Wu Sha-Sha, Shen Li-Ming, Ling Rui, Dai Zhong-Wu, Liu Zhong-Jian, Lan Si-Ren

机构信息

Key Laboratory of National Forestry and Grassland Administration for Orchid Conservation and Utilization at College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, China.

Fujian Ornamental Plant Germplasm Resources Innovation and Engineering Application Research Center, Fujian Agriculture and Forestry University, Fuzhou, China.

出版信息

Mitochondrial DNA B Resour. 2019 Jul 16;4(2):2576-2578. doi: 10.1080/23802359.2019.1640642.

DOI:10.1080/23802359.2019.1640642
PMID:33365633
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7706524/
Abstract

is a vulnerable epiphytic orchid with significant ornamental value. Here, we report the first complete chloroplast genome of . The circular genome was 158,880 bp in length and consisted of a pair of inverted repeats (IR 26,465 bp), which were separated by a large single copy region (LSC 87,259 bp) and a small single copy region (SSC 18,691 bp). It contained 115 unique genes, including 87 protein-coding genes, 38 tRNAs, and eight rRNAs. The maximum-likelihood phylogenetic analysis indicated that was sister to and .

摘要

是一种具有重要观赏价值的易危附生兰花。在此,我们报道了 的首个完整叶绿体基因组。该环状基因组长度为158,880 bp,由一对反向重复序列(IR 26,465 bp)组成,这对反向重复序列被一个大单拷贝区域(LSC 87,259 bp)和一个小单拷贝区域(SSC 18,691 bp)隔开。它包含115个独特基因,包括87个蛋白质编码基因、38个tRNA和8个rRNA。最大似然系统发育分析表明, 与 和 是姐妹关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03dd/7706524/94ffe4e47dbb/TMDN_A_1640642_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03dd/7706524/94ffe4e47dbb/TMDN_A_1640642_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/03dd/7706524/94ffe4e47dbb/TMDN_A_1640642_F0001_B.jpg

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