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(蔷薇科)的叶绿体基因组。

The chloroplast genome of (Rosaceae).

作者信息

Zhao Kai, Zhou Yuzhen, Zheng Yan, Chen Bin, Ziling Wei

机构信息

College of Life Science, Fujian Normal University, Fuzhou, PR China.

College of Landscape Architecture, Fujian Agriculture and Forestry University, Fuzhou, PR China.

出版信息

Mitochondrial DNA B Resour. 2019 Nov 13;4(2):4033-4034. doi: 10.1080/23802359.2019.1688723.

DOI:10.1080/23802359.2019.1688723
PMID:33366304
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7707654/
Abstract

Recent sequencing technology helps analyze genome-level aberrance between wild species and highly domesticated cultivars by producing high-quality genomes. Herein, we established the complete chloroplast genome of to lay a foundation in the future genetic comparison and modification. The chloroplast genome was 158,005 bp in length, with a large single-copy (LSC) region of 86,012 bp and a small single-copy (SSC) region of 19,121 bp, separated by two inverted repeat (IRs) regions of 26,436 bp. A total of 124 CDSs , 37 tRNA genes, and 8 rRNA genes were found. The overall GC content was 36.70%, and GC percentages ranged from 30.20 to 42.53% throughout LSC, IRs, and SSC regions. Phylogenetic analysis showed that displayed a kinship to with the subsection nested inside . This announcement of the chloroplast genome sequence may provide insight into the interspecific natural hybridization in . .

摘要

最近的测序技术通过生成高质量的基因组,有助于分析野生种和高度驯化品种之间的基因组水平异常。在此,我们建立了[物种名称]的完整叶绿体基因组,为未来的遗传比较和改良奠定基础。叶绿体基因组长度为158,005 bp,其中大单拷贝(LSC)区域为86,012 bp,小单拷贝(SSC)区域为19,121 bp,由两个26,436 bp的反向重复(IR)区域隔开。共发现124个编码序列(CDS)、37个tRNA基因和8个rRNA基因。总体GC含量为36.70%,在整个LSC、IR和SSC区域,GC百分比范围为30.20%至42.53%。系统发育分析表明,[物种名称]与[相关物种名称]有亲缘关系,[嵌套的亚组名称]嵌套在[所属组名称]内。[物种名称]叶绿体基因组序列的公布可能有助于深入了解[物种名称]中的种间自然杂交情况。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b40d/7707654/9344e49679a0/TMDN_A_1688723_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b40d/7707654/9344e49679a0/TMDN_A_1688723_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b40d/7707654/9344e49679a0/TMDN_A_1688723_F0001_C.jpg

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Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
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The chloroplast genome of Cerasus humilis: Genomic characterization and phylogenetic analysis.矮樱的叶绿体基因组:基因组特征与系统发育分析。
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Front Plant Sci. 2018 Feb 27;9:238. doi: 10.3389/fpls.2018.00238. eCollection 2018.
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