• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

唐棣(蔷薇科)的完整叶绿体基因组序列。

The complete chloroplast genome sequence of Thunb. (Rosaceae).

作者信息

Yi Meihong, Yang Lixue, Zhou Shiliang

机构信息

Key Laboratory of Sustainable Forest Ecosystem Management-Ministry of Education, School of Forestry, Northeast Forestry University, Harbin, PR China.

State Key Laboratory of Systematic and Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, PR China.

出版信息

Mitochondrial DNA B Resour. 2021 Sep 30;6(11):3107-3108. doi: 10.1080/23802359.2021.1982655. eCollection 2021.

DOI:10.1080/23802359.2021.1982655
PMID:34621990
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8491658/
Abstract

Thunb. is an ornamental species in the genus (Rosaceae) mainly distributed in eastern China. It is often cultivated in gardens, roadsides, or shrub clusters. It looks like a cherry but resembles to prunes as well. We obtained the complete chloroplast genome of using next-generation sequencing technology. The chloroplast genome is 158.078 bp in length with typical tetrad structure. It includes two copies of inverted repeats (IRs, 26.385 bp), a large single copy (LSC, 86.269 bp) and a small single copy (SSC, 19.039 bp). The total GC content is 36.7%, including 85 protein-coding genes (PCGs), 36 transfer genes (tRNA), and eight ribosomal genes (rRNA). The maximum-likelihood phylogeny using the full length of chloroplast genomes indicates that is closer to prunes than to cherries.

摘要

郁李是蔷薇科(Rosaceae)李属的一种观赏植物,主要分布于中国东部。它常被种植于花园、路边或灌木丛中。它看起来像樱桃,但也类似李子。我们使用下一代测序技术获得了郁李的完整叶绿体基因组。叶绿体基因组长度为158,078 bp,具有典型的四分体结构。它包括两个反向重复序列(IRs,26,385 bp)、一个大单拷贝(LSC,86,269 bp)和一个小单拷贝(SSC,19,039 bp)。总GC含量为36.7%,包括85个蛋白质编码基因(PCGs)、36个转运RNA基因(tRNA)和8个核糖体RNA基因(rRNA)。使用叶绿体基因组全长构建的最大似然系统发育树表明,郁李与李子的亲缘关系比与樱桃更近。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9c9/8491658/458d36b0507c/TMDN_A_1982655_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9c9/8491658/458d36b0507c/TMDN_A_1982655_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d9c9/8491658/458d36b0507c/TMDN_A_1982655_F0001_C.jpg

相似文献

1
The complete chloroplast genome sequence of Thunb. (Rosaceae).唐棣(蔷薇科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2021 Sep 30;6(11):3107-3108. doi: 10.1080/23802359.2021.1982655. eCollection 2021.
2
Complete chloroplast genome of the wild Japanese Mountain cherry (, Rosaceae).野生日本山樱(蔷薇科)的完整叶绿体基因组
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):290-291. doi: 10.1080/23802359.2019.1699463.
3
Complete chloroplast genome of (Rosaceae), a wild flowering cherry from Japan.日本野生开花樱桃(蔷薇科)的完整叶绿体基因组
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):262-263. doi: 10.1080/23802359.2019.1699459.
4
The complete chloroplast genome sequence of cultivated cv. 'Sovetskiy'.栽培品种‘Sovetskiy’的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2021 Sep 9;6(10):2882-2883. doi: 10.1080/23802359.2021.1972861. eCollection 2021.
5
The complete chloroplast genome of thunb.(Rosaceae), an ornamental and medicinal plant.李(蔷薇科)的完整叶绿体基因组,一种观赏兼药用植物。 (注:原文中“thunb.”可能有误,推测可能是“Prunus salicina Lindl. var. cordata (Thunb.) Yu et Lu”之类的,这里暂且按常见植物名翻译为“李” )
Mitochondrial DNA B Resour. 2021 Jan 13;6(1):112-114. doi: 10.1080/23802359.2020.1848477.
6
The complete chloroplast genome sequence of (Rosaceae).(蔷薇科)的完整叶绿体基因组序列。
Mitochondrial DNA B Resour. 2020 Jul 15;5(3):2826-2827. doi: 10.1080/23802359.2020.1790317.
7
Complete chloroplast genome of (Rosaceae), a wild flowering cherry endemic to the Himalayan region.喜马拉雅地区特有的野生开花樱桃——(蔷薇科)的完整叶绿体基因组。
Mitochondrial DNA B Resour. 2019 Dec 13;5(1):160-161. doi: 10.1080/23802359.2019.1698363.
8
Complete chloroplast genome of and its implications for the phylogenetic position within (Rosaceae).[植物名称]的完整叶绿体基因组及其在[蔷薇科某属]内系统发育位置的意义
Mitochondrial DNA B Resour. 2019 Oct 15;4(2):3558-3559. doi: 10.1080/23802359.2019.1674724.
9
Complete chloroplast genome of Prunus yedoensis Matsum.(Rosaceae), wild and endemic flowering cherry on Jeju Island, Korea.韩国济州岛野生及本土开花植物东京樱花(蔷薇科)的完整叶绿体基因组
Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Sep;27(5):3652-4. doi: 10.3109/19401736.2015.1079840. Epub 2015 Sep 2.
10
Complete chloroplast genome of and its implications for the phylogenetic position within (Rosaceae).[物种名称]的完整叶绿体基因组及其在[蔷薇科某属]内系统发育位置的意义。 (注:原文中两个“and”前应补充具体物种名称和蔷薇科下的某属名称,这里按通用格式给出译文以便理解)
Mitochondrial DNA B Resour. 2020 Oct 27;5(3):3624-3626. doi: 10.1080/23802359.2020.1831993.

引用本文的文献

1
Characterization and phylogenetic analysis of the chloroplast genome in .. 中叶绿体基因组的表征与系统发育分析
Mitochondrial DNA B Resour. 2024 Sep 30;9(10):1307-1312. doi: 10.1080/23802359.2024.2409759. eCollection 2024.

本文引用的文献

1
Unraveling heteroplasmy patterns with NOVOPlasty.使用NOVOPlasty解析异质性模式。
NAR Genom Bioinform. 2019 Oct 24;2(1):lqz011. doi: 10.1093/nargab/lqz011. eCollection 2020 Mar.
2
PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
3
ModelFinder: fast model selection for accurate phylogenetic estimates.ModelFinder:用于准确系统发育估计的快速模型选择
Nat Methods. 2017 Jun;14(6):587-589. doi: 10.1038/nmeth.4285. Epub 2017 May 8.
4
NOVOPlasty: de novo assembly of organelle genomes from whole genome data.NOVOPlasty:从头组装细胞器基因组的全基因组数据。
Nucleic Acids Res. 2017 Feb 28;45(4):e18. doi: 10.1093/nar/gkw955.
5
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies.IQ-TREE:一种用于估计最大似然系统发育树的快速且有效的随机算法。
Mol Biol Evol. 2015 Jan;32(1):268-74. doi: 10.1093/molbev/msu300. Epub 2014 Nov 3.
6
MAFFT multiple sequence alignment software version 7: improvements in performance and usability.MAFFT 多序列比对软件版本 7:性能和易用性的改进。
Mol Biol Evol. 2013 Apr;30(4):772-80. doi: 10.1093/molbev/mst010. Epub 2013 Jan 16.