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(兰科)一种濒危药用和观赏植物的完整质体基因组序列。

The complete plastome sequence of (Orchidaceae): an endangered medicinal and ornamental plant.

作者信息

Zhang Xiao, Li Huaizhu, Huang Huan, Wang Qiaoli

机构信息

School of Chemistry and Chemical Engineering, Xianyang Normal University, Xianyang City, PR China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 10;5(1):468-469. doi: 10.1080/23802359.2019.1704643.

DOI:10.1080/23802359.2019.1704643
PMID:33366605
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7748498/
Abstract

(Thunb. ex A. Marray) Lindl belongs to the genus within family Orchidaceae, is an endangered herbal species in the East Asia area. In this study, the complete plastome sequence (cpDNA) of was determined by next-generation Illumina sequencing. The cpDNA of this herbal plant is 155,409 bp in size, with a pair of inverted repeat (IR) regions of 26,933 bp that separate a large single-copy (LSC) region of 84,049 bp and a small single-copy (SSC) region of 17,494 bp. The GC content in plastome is 36.9%, and the IR region (43.2%) is higher than that of the LSC and SSC region (34.4% and 29.7%, respectively), which is similar with other Orchidaceae plastomes. The assembled plastome encoded 133 genes, which included 38 tRNA genes, 8 rRNA genes, and 87 protein-coding genes. A total of 24 species were used to construct the phylogenetic relationships among and other related species within Orchidaceae. The results showed that is closely related to .

摘要

(拇指兰属,以A. 马里命名)林德尔属于兰科下的一个属,是东亚地区的一种濒危草本植物。在本研究中,通过下一代Illumina测序确定了该植物的完整叶绿体基因组序列(cpDNA)。这种草本植物的cpDNA大小为155,409 bp,有一对26,933 bp的反向重复(IR)区域,将一个84,049 bp的大单拷贝(LSC)区域和一个17,494 bp的小单拷贝(SSC)区域分开。叶绿体基因组中的GC含量为36.9%,IR区域(43.2%)高于LSC和SSC区域(分别为34.4%和29.7%),这与其他兰科叶绿体基因组相似。组装的叶绿体基因组编码133个基因,包括38个tRNA基因、8个rRNA基因和87个蛋白质编码基因。总共使用了24个物种来构建该植物与兰科其他相关物种之间的系统发育关系。结果表明,该植物与某植物密切相关。 (原文中部分植物名称未给出具体中文,保留英文)

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0338/7748498/5a7f8b2796b1/TMDN_A_1704643_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0338/7748498/5a7f8b2796b1/TMDN_A_1704643_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0338/7748498/5a7f8b2796b1/TMDN_A_1704643_F0001_B.jpg

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本文引用的文献

1
Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach.直接从基因组下一代测序读段重建线粒体基因组——一种诱饵和迭代映射方法。
Nucleic Acids Res. 2013 Jul;41(13):e129. doi: 10.1093/nar/gkt371. Epub 2013 May 9.
2
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.Geneious Basic:一个集成和可扩展的桌面软件平台,用于组织和分析序列数据。
Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.
3
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
RAxML-VI-HPC:基于最大似然法的系统发育分析,适用于数千个分类单元及混合模型。
Bioinformatics. 2006 Nov 1;22(21):2688-90. doi: 10.1093/bioinformatics/btl446. Epub 2006 Aug 23.
4
Automatic annotation of organellar genomes with DOGMA.使用DOGMA对细胞器基因组进行自动注释。
Bioinformatics. 2004 Nov 22;20(17):3252-5. doi: 10.1093/bioinformatics/bth352. Epub 2004 Jun 4.
5
Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.使用miraEST组装程序在已测序的EST中进行可靠且自动化的mRNA转录本组装和SNP检测。
Genome Res. 2004 Jun;14(6):1147-59. doi: 10.1101/gr.1917404. Epub 2004 May 12.
6
MODELTEST: testing the model of DNA substitution.MODELTEST:测试DNA替代模型。
Bioinformatics. 1998;14(9):817-8. doi: 10.1093/bioinformatics/14.9.817.