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中国经济植物罗氏木(Roem. et Schult.)的完整叶绿体基因组。

The complete chloroplast genome of Roem. et Schult., an economic plant to China.

作者信息

Qin Binbin, Liu Yujuan, Huang ZeYun, Liu Jing, Chen Qinpei, Jia Guolun, Xie Jun

机构信息

State Key Laboratory of Seeding Bioengineering, Ningxia Forestry Institute, Yinchuan, Ningxia, China.

Ningxia Forestry Technology Popularization Station, Yinchuan, Ningxia, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jan 14;5(1):562-563. doi: 10.1080/23802359.2019.1710289.

Abstract

The chloroplast (cp) genome sequence of has been characterized from Illumina pair-end sequencing. The complete cp genome was 160,830 bp in length, containing a large single-copy region (LSC) of 89,049 bp and a small single-copy region (SSC) of 19,071 bp, which were separated by a pair of 26,355 bp inverted repeat regions (IRs). The genome contained 131 genes, including 88 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content is 37.4%, while the corresponding values of the LSC, SSC, and IR regions are 35.3, 31.7, and 43.0%, respectively. Further, the phylogenetic analysis suggested that was closely related to .

摘要

已通过Illumina双末端测序对[物种名称]的叶绿体(cp)基因组序列进行了表征。完整的cp基因组长度为160,830 bp,包含一个89,049 bp的大单拷贝区域(LSC)和一个19,071 bp的小单拷贝区域(SSC),它们被一对26,355 bp的反向重复区域(IRs)隔开。该基因组包含131个基因,包括88个蛋白质编码基因、37个tRNA基因和8个rRNA基因。总体GC含量为37.4%,而LSC、SSC和IR区域的相应值分别为35.3%、31.7%和43.0%。此外,系统发育分析表明[物种名称]与[另一物种名称]密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/26cf/7748628/713c29b76d35/TMDN_A_1710289_F0001_B.jpg

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本文引用的文献

1
The First Complete Chloroplast Genome Sequences in Actinidiaceae: Genome Structure and Comparative Analysis.
PLoS One. 2015 Jun 5;10(6):e0129347. doi: 10.1371/journal.pone.0129347. eCollection 2015.
2
MrBayes 3: Bayesian phylogenetic inference under mixed models.
Bioinformatics. 2003 Aug 12;19(12):1572-4. doi: 10.1093/bioinformatics/btg180.

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