红树林蕨类植物的完整叶绿体基因组。
The complete chloroplast genomes of the mangrove fern .
作者信息
Zhong Yan, Yu Runxian, Chen Yongmei, Zhou Renchao, Liu Ying
机构信息
State Key Laboratory of Biocontrol and Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
School of Chemical Engineering, Sichuan University of Science & Engineering, Zigong, China.
出版信息
Mitochondrial DNA B Resour. 2020 Jun 1;5(3):2258-2259. doi: 10.1080/23802359.2020.1772140. eCollection 2020.
The mangrove fern is widely distributed in the Indo West-Pacific and Atlantic East-Pacific regions. Here we assembled and annotated its chloroplast genome based on the Illumina sequencing reads. The complete chloroplast genome of was 154,805 bp in length with the GC content of 38.38%. It contains a large single copy (LSC) region of 82,826 bp and a small single copy (SSC) region of 21,617 bp, separated by a pair of inverted repeat region (IRs) of 25,181 bp each. It contains 84 protein coding genes, 27 tRNA genes, and four rRNA genes. Phylogenetic analysis shows that is closest to in the subfamily Parkerioideae. The chloroplast genome of reported here offers a useful resource for its phylogeography and conservation genetics studies.
红树蕨广泛分布于印度-西太平洋和大西洋东太平洋地区。在此，我们基于Illumina测序读数组装并注释了其叶绿体基因组。其完整的叶绿体基因组长度为154,805 bp，GC含量为38.38%。它包含一个82,826 bp的大单拷贝（LSC）区域和一个21,617 bp的小单拷贝（SSC）区域，由一对各为25,181 bp的反向重复区域（IR）隔开。它包含84个蛋白质编码基因、27个tRNA基因和4个rRNA基因。系统发育分析表明，它在帕克蕨亚科中与[某物种]关系最为密切。此处报道的[该物种]叶绿体基因组为其系统地理学和保护遗传学研究提供了有用的资源。
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