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极端耐旱植物的完整叶绿体基因组

The complete chloroplast genome of the extremely drought-resistant plant .

作者信息

Lu Yongbin, Qin Xinmei, Huang Zhangping, Zhang Qiang, Shen Lina

机构信息

Guangxi Key Laboratory of Plant Conservation and Restoration Ecology in Karst Terrain, Guangxi Institute of Botany, Guilin, Guangxi, China.

Key Laboratory of Karst Ecosystem and Treatment of Rocky Desertification, Ministry of Land and Resources, Institute of Karst Geology of Chinese Academy of Geology Sciences, Guilin, Guangxi, China.

出版信息

Mitochondrial DNA B Resour. 2020 Jun 2;5(3):2271-2272. doi: 10.1080/23802359.2020.1768950. eCollection 2020.

DOI:10.1080/23802359.2020.1768950
PMID:33367004
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7510621/
Abstract

is a perennial herb of Gesneriaceae distributed on the limestone rocks. Here, the complete chloroplast (cp) genome of was assembled and characterized. The cp genome is in a total length of 152,718 bp with the typical quadripartite structure, containing 2 inverted repeats (IRs) of 25,472 bp separated by a large single-copy (LSC) region of 83,615 bp and a small single-copy (SSC) region of 18,159 bp. The whole cp genome of contains 131 genes, including 86 protein-coding genes, 37 tRNAs genes, and 8 rRNAs. The phylogenetic analysis indicated that displayed a closer kinship to .

摘要

是一种分布于石灰岩上的苦苣苔科多年生草本植物。在此,组装并鉴定了其完整的叶绿体(cp)基因组。该cp基因组全长152,718 bp,具有典型的四分体结构,包含两个25,472 bp的反向重复序列(IRs),中间由一个83,615 bp的大单拷贝(LSC)区域和一个18,159 bp的小单拷贝(SSC)区域隔开。其整个cp基因组包含131个基因,包括86个蛋白质编码基因、37个tRNA基因和8个rRNA基因。系统发育分析表明,与显示出更近的亲缘关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a20/7510621/133781b4a13f/TMDN_A_1768950_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a20/7510621/133781b4a13f/TMDN_A_1768950_F0001_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7a20/7510621/133781b4a13f/TMDN_A_1768950_F0001_B.jpg

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本文引用的文献

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PGA: a software package for rapid, accurate, and flexible batch annotation of plastomes.PGA:一个用于叶绿体基因组快速、准确且灵活批量注释的软件包。
Plant Methods. 2019 May 21;15:50. doi: 10.1186/s13007-019-0435-7. eCollection 2019.
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SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models.
RAxML-VI-HPC:基于最大似然法的系统发育分析,适用于数千个分类单元及混合模型。
Bioinformatics. 2006 Nov 1;22(21):2688-90. doi: 10.1093/bioinformatics/btl446. Epub 2006 Aug 23.