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(马钱科)的完整叶绿体基因组。

The complete chloroplast genome of (Loganiaceae).

作者信息

Du Xiaolang, Cao Lan, Sheng Shasha, Zhong Guoyue, Mu Zejing

机构信息

Research Center for Traditional Chinese Medicine Resources and Ethnic Minority Medicine, Jiangxi university of Traditional Chinese Medicine, Nanchang, China.

出版信息

Mitochondrial DNA B Resour. 2020 Nov 20;5(3):3812-3813. doi: 10.1080/23802359.2020.1835575.

Abstract

The complete chloroplast (cp) genome of was sequenced and assembled for the first time. The genome is 154,665 bp in length, containing a large single-copy (LSC) region of 85,351 bp, a small single-copy region (SSC) of 18,218 bp and a pair of inverted repeats (IRs) of 25,548 bp. It contains 113 unique genes, including 79 protein-coding genes, 30 tRNA genes, and 4 rRNA genes. The overall GC content is 37.9%, while the corresponding values of LSC, SSC, and IR regions are 35.9, 32.0, and 43.4%, respectively. Phylogenetic analyses using complete cp genomes showed that is most closely related to in Loganiaceae, and Gelsemiaceae and Loganiaceae form a single cluster with high support value.

摘要

首次对[物种名称]的完整叶绿体(cp)基因组进行了测序和组装。该基因组长度为154,665 bp,包含一个85,351 bp的大单拷贝(LSC)区域、一个18,218 bp的小单拷贝区域(SSC)和一对25,548 bp的反向重复序列(IR)。它包含113个独特基因,包括79个蛋白质编码基因、30个tRNA基因和4个rRNA基因。总体GC含量为37.9%,而LSC、SSC和IR区域的相应值分别为35.9%、32.0%和43.4%。使用完整cp基因组进行的系统发育分析表明,[物种名称]与马钱科中的[另一物种名称]关系最为密切,并且钩吻科和马钱科形成了一个具有高支持值的单簇。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b6b3/7682734/76d3e56ea937/TMDN_A_1835575_F0001_B.jpg

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