Garcia-Martin Juan Antonio, Chavarría Max, de Lorenzo Victor, Pazos Florencio
Bioinformatics for Genomics and Proteomics, National Centre for Biotechnology (CNB-CSIC), 28049 Madrid, Spain.
Escuela de Química/CIPRONA Universidad de Costa Rica, 11501-2060 San José, Costa Rica.
Biol Methods Protoc. 2020 Nov 13;5(1):bpaa025. doi: 10.1093/biomethods/bpaa025. eCollection 2020.
The environmental fate of many functional molecules that are produced on a large scale as precursors or as additives to specialty goods (plastics, fibers, construction materials, etc.), let alone those synthesized by the pharmaceutical industry, is generally unknown. Assessing their environmental fate is crucial when taking decisions on the manufacturing, handling, usage, and release of these substances, as is the evaluation of their toxicity in humans and other higher organisms. While this data are often hard to come by, the experimental data already available on the biodegradability and toxicity of many unusual compounds (including genuinely xenobiotic molecules) make it possible to develop machine learning systems to predict these features. As such, we have created a predictor of the "risk" associated with the use and release of any chemical. This new system merges computational methods to predict biodegradability with others that assess biological toxicity. The combined platform, named (https://sysbiol.cnb.csic.es/BiodegPred/), provides an informed prognosis of the chance a given molecule can eventually be catabolized in the biosphere, as well as of its eventual toxicity, all available through a simple web interface. While the platform described does not give much information about specific degradation kinetics or particular biodegradation pathways, has been instrumental in anticipating the probable behavior of a large number of new molecules (e.g. antiviral compounds) for which no biodegradation data previously existed.
许多作为前体或特种商品(塑料、纤维、建筑材料等)添加剂大规模生产的功能分子,更不用说制药行业合成的那些分子,其环境归宿通常是未知的。在对这些物质的制造、处理、使用和释放做出决策时,评估它们的环境归宿至关重要,评估它们对人类和其他高等生物的毒性也是如此。虽然这些数据往往很难获得,但现有的关于许多不寻常化合物(包括真正的外源性分子)的生物降解性和毒性的实验数据使得开发机器学习系统来预测这些特征成为可能。因此,我们创建了一个预测任何化学品使用和释放相关“风险”的模型。这个新系统将预测生物降解性的计算方法与评估生物毒性的其他方法结合起来。这个名为(https://sysbiol.cnb.csic.es/BiodegPred/)的综合平台,通过一个简单的网络界面,提供了关于给定分子最终能否在生物圈中被分解代谢的可能性以及其最终毒性的明智预测。虽然所描述的平台没有提供太多关于特定降解动力学或特定生物降解途径的信息,但它在预测大量以前没有生物降解数据的新分子(如抗病毒化合物)的可能行为方面发挥了重要作用。