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组氨酸门控质子耦合电子转移到一氧化二氮还原酶的铜位点。

Histidine-Gated Proton-Coupled Electron Transfer to the Cu Site of Nitrous Oxide Reductase.

机构信息

Institut für Biochemie, Albert-Ludwigs-Universität Freiburg, Albertstraße 21, 79104 Freiburg im Breisgau, Germany.

Max-Planck-Institut für Chemische Energiekonversion, Stiftstraße 34-36, D-45470 Mülheim an der Ruhr, Germany.

出版信息

J Am Chem Soc. 2021 Jan 20;143(2):830-838. doi: 10.1021/jacs.0c10057. Epub 2020 Dec 30.

DOI:10.1021/jacs.0c10057
PMID:33377777
Abstract

Copper-containing nitrous oxide reductase (NOR) is the only known enzyme to catalyze the conversion of the environmentally critical greenhouse gas nitrous oxide (NO) to dinitrogen (N) as the final step of bacterial denitrification. Other than its unique tetranuclear active site Cu, the binuclear electron entry point Cu is also utilized in other enzymes, including cytochrome oxidase. In the Cu site of NOR, a histidine ligand was found to undergo a conformational flip upon binding of the substrate NO between the two copper centers. Here we report on the systematic mutagenesis and spectroscopic and structural characterization of this histidine and surrounding H-bonding residues, based on an established functional expression system for NOR in . A single hydrogen bond from Ser550 is sufficient to stabilize an unbound conformation of His583, as shown in a Asp576Ala variant, while the additional removal of the hydrogen bond in a Asp576Ala/Ser550Ala double variant compelled His583 to stay in a bound conformation as a ligand to Cu. Systematic mutagenesis of His583 to Ala, Asp, Asn, Glu, Gln, Lys, Phe, Tyr, and Trp showed that although both the Cu and Cu sites were present in all the variants, only the ones with a protonable side chain, i.e., His, Asp, and Glu, were able to mediate electron transfer at physiological pH. This observation is in line with a proton-coupled electron transfer mechanism at the Cu site of NOR.

摘要

含铜的一氧化二氮还原酶(NOR)是唯一已知的能够催化环境关键温室气体一氧化二氮(NO)转化为最终产物氮气(N)的酶,这是细菌反硝化作用的最后一步。除了其独特的四核活性位点 Cu 之外,双核电子进入点 Cu 也被用于其他酶,包括细胞色素 c 氧化酶。在 NOR 的 Cu 位点中,发现一个组氨酸配体在两个铜中心之间结合底物 NO 时会发生构象翻转。在这里,我们基于 NOR 在 中的已建立的功能表达系统,对这个组氨酸及其周围氢键残基进行了系统的突变和光谱学及结构特征分析。来自 Ser550 的单个氢键足以稳定 His583 的无结合构象,如在 Asp576Ala 变体中所示,而在 Asp576Ala/Ser550Ala 双变体中进一步去除氢键会迫使 His583 保持结合构象,作为 Cu 的配体。对 His583 进行 Ala、Asp、Asn、Glu、Gln、Lys、Phe、Tyr 和 Trp 的系统突变表明,尽管所有变体中都存在 Cu 和 Cu 位点,但只有具有可质子化侧链的 His、Asp 和 Glu 变体能够在生理 pH 下介导电子转移。这一观察结果与 NOR 的 Cu 位点的质子耦合电子转移机制一致。

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