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处于“零空穴”和“单空穴”状态的硫化铜团簇:一氧化氮还原酶活性铜*位点的几何结构和电子结构变化

CuS Cluster in "0-Hole" and "1-Hole" States: Geometric and Electronic Structure Variations for the Active Cu* Site of NO Reductase.

作者信息

Liu Yang, Chatterjee Sayanti, Cutsail George E, Peredkov Sergey, Gupta Sandeep K, Dechert Sebastian, DeBeer Serena, Meyer Franc

机构信息

Institute of Inorganic Chemistry, University of Göttingen, Tammannstraße 4, 37077 Göttingen, Germany.

Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, 45470 Mülheim an der Ruhr, Germany.

出版信息

J Am Chem Soc. 2023 Aug 23;145(33):18477-18486. doi: 10.1021/jacs.3c04893. Epub 2023 Aug 11.

Abstract

The active site of nitrous oxide reductase (NOR), a key enzyme in denitrification, features a unique μ-sulfido-bridged tetranuclear Cu cluster (the so-called Cu or Cu* site). Details of the catalytic mechanism have remained under debate and, to date, synthetic model complexes of the Cu*/Cu sites are extremely rare due to the difficulty in building the unique {Cu(μ-S)} core structure. Herein, we report the synthesis and characterization of [Cu(μ-S)] ( = 2, ; = 3, ) clusters, supported by a macrocyclic {pyNHC} ligand (py = pyridine, NHC = -heterocyclic carbene), in both their 0-hole () and 1-hole () states, thus mimicking the two active states of the Cu* site during enzymatic NO reduction. Structural and electronic properties of these {Cu(μ-S)} clusters are elucidated by employing multiple methods, including X-ray diffraction (XRD), nuclear magnetic resonance (NMR), UV/vis, electron paramagnetic resonance (EPR), Cu/S K-edge X-ray emission spectroscopy (XES), and Cu K-edge X-ray absorption spectroscopy (XAS) in combination with time-dependent density functional theory (TD-DFT) calculations. A significant geometry change of the {Cu(μ-S)} core occurs upon oxidation from (τ(S) = 0.46, seesaw) to (τ(S) = 0.03, square planar), which has not been observed so far for the biological Cu(*) site and is unprecedented for known model complexes. The single electron of the 1-hole species is predominantly delocalized over two opposite Cu ions via the central S atom, mediated by a π/π superexchange pathway. Cu K-edge XAS and Cu/S K-edge XES corroborate a mixed Cu/S-based oxidation event in which the lowest unoccupied molecular orbital (LUMO) has a significant S-character. Furthermore, preliminary reactivity studies evidence a nucleophilic character of the central μ-S in the fully reduced 0-hole state.

摘要

一氧化二氮还原酶(NOR)是反硝化作用中的关键酶,其活性位点具有独特的μ-硫桥连四核铜簇(即所谓的Cu或Cu位点)。催化机制的细节一直存在争议,迄今为止,由于构建独特的{Cu(μ-S)}核心结构存在困难,Cu/Cu位点的合成模型配合物极为罕见。在此,我们报告了由大环{pyNHC}配体(py = 吡啶,NHC = N-杂环卡宾)支撑的[Cu(μ-S)](n = 2,L;n = 3,L')簇在其0空穴(L)和1空穴(L')状态下的合成与表征,从而模拟了Cu位点在酶促NO还原过程中的两种活性状态。通过采用多种方法,包括X射线衍射(XRD)、核磁共振(NMR)、紫外/可见光谱、电子顺磁共振(EPR)、Cu/S K边X射线发射光谱(XES)以及Cu K边X射线吸收光谱(XAS)并结合含时密度泛函理论(TD-DFT)计算,阐明了这些{Cu(μ-S)}簇的结构和电子性质。{Cu(μ-S)}核心在从L(τ(S) = 0.46,跷跷板型)氧化为L'(τ(S) = 0.03,平面正方形)时发生了显著的几何变化,这在生物Cu()位点中尚未观察到,对于已知的模型配合物来说也是前所未有的。1空穴物种L'的单电子主要通过中心S原子在两个相对的Cu离子上离域,由π/π超交换途径介导。Cu K边XAS和Cu/S K边XES证实了基于Cu/S的混合氧化事件,其中最低未占据分子轨道(LUMO)具有显著的S特征。此外,初步的反应性研究证明了在完全还原的0空穴状态下中心μ-S的亲核特性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7960/10450684/33c3a85b4e51/ja3c04893_0001.jpg

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