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生物化学的时间计量:再入相位转变。

Biochemical Timekeeping Via Reentrant Phase Transitions.

机构信息

Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.

Department of Biochemistry and Biophysics, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA 19104, USA.

出版信息

J Mol Biol. 2021 Jun 11;433(12):166794. doi: 10.1016/j.jmb.2020.166794. Epub 2020 Dec 31.

Abstract

Appreciation for the role of liquid-liquid phase separation in the functional organization of cellular matter has exploded in recent years. More recently there has been a growing effort to understand the principles of heterotypic phase separation, the demixing of multiple proteins and nucleic acids into a single functional condensate. A phase transition is termed reentrant if it involves the transformation of a system from one state into a macroscopically similar or identical state via at least two phase transitions elicited by variation of a single parameter. Reentrant liquid-liquid phase separation can occur when the condensation of one species is tuned by another. Reentrant phase transitions have been modeled in vitro using protein and RNA mixtures. These biochemical studies reveal two features of reentrant phase separation that are likely important to functional cellular condensates: (1) the ability to generate condensates with layered functional topologies, and (2) the ability to generate condensates whose composition and duration are self-limiting to enable a form of biochemical timekeeping. We relate these biochemical studies to potential cellular examples and discuss how layered topologies and self-regulation may impact key biological processes.

摘要

近年来,人们对液-液相分离在细胞物质功能组织中的作用的认识有了爆炸式的增长。最近,人们越来越努力地理解异质相分离的原理,即多种蛋白质和核酸分离到单个功能凝聚体中。如果相变涉及通过单一参数的变化引发至少两次相变,将系统从一种状态转变为宏观相似或相同的状态,则将其称为重入。当一种物质的凝聚受另一种物质的调节时,就会发生重入液-液相分离。使用蛋白质和 RNA 混合物在体外对重入相变进行了建模。这些生化研究揭示了重入相分离的两个特征,这些特征可能对功能性细胞凝聚物很重要:(1)生成具有分层功能拓扑结构的凝聚物的能力,(2)生成其组成和持续时间受到自我限制的凝聚物的能力,从而实现一种生化计时。我们将这些生化研究与潜在的细胞实例联系起来,并讨论分层拓扑结构和自我调节如何影响关键的生物过程。

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