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糖蛋白质组学研究的最新进展:糖肽富集和衍生化、SARS CoV2 中糖基化的特征分析以及相互作用的糖蛋白。

Recent advancements in glycoproteomic studies: Glycopeptide enrichment and derivatization, characterization of glycosylation in SARS CoV2, and interacting glycoproteins.

机构信息

Chemistry Department, University of Manitoba, Winnipeg, Manitoba, Canada.

出版信息

Mass Spectrom Rev. 2022 May;41(3):488-507. doi: 10.1002/mas.21679. Epub 2021 Jan 3.

Abstract

Proteomics studies allow for the determination of the identity, amount, and interactions of proteins under specific conditions that allow the biological state of an organism to ultimately change. These conditions can be either beneficial or detrimental. Diseases are due to detrimental changes caused by either protein overexpression or underexpression caused by as a result of a mutation or posttranslational modifications (PTM), among other factors. Identification of disease biomarkers through proteomics can be potentially used as clinical information for diagnostics. Common biomarkers to look for include PTM. For example, aberrant glycosylation of proteins is a common marker and will be a focus of interest in this review. A common way to analyze glycoproteins is by glycoproteomics involving mass spectrometry. Due to factors such as micro- and macroheterogeneity which result in a lower abundance of each version of a glycoprotein, it is difficult to obtain meaningful results unless rigorous sample preparation procedures are in place. Microheterogeneity represents the diversity of glycans at a single site, whereas macroheterogeneity depicts glycosylation levels at each site of a protein. Enrichment and derivatization of glycopeptides help to overcome these limitations. Over the time range of 2016 to 2020, several methods have been proposed in the literature and have contributed to drastically improve the outcome of glycosylation analysis, as presented in the sampling surveyed in this review. As a current topic in 2020, glycoproteins carried by pathogens can also cause disease and this is seen with SARS CoV2, causing the COVID-19 pandemic. This review will discuss glycoproteomic studies of the spike glycoprotein and interacting proteins such as the ACE2 receptor.

摘要

蛋白质组学研究能够确定特定条件下蛋白质的身份、数量和相互作用,这些条件可以是有益的,也可以是有害的。疾病是由蛋白质过度表达或表达不足引起的,这种情况可能是由于基因突变或翻译后修饰(PTM)等因素造成的。通过蛋白质组学鉴定疾病生物标志物可作为临床诊断信息。常见的生物标志物包括 PTM。例如,蛋白质异常糖基化是一种常见的标志物,将是本综述关注的焦点。分析糖蛋白的一种常见方法是通过涉及质谱的糖蛋白质组学。由于微异质性和宏异质性等因素,导致每种糖蛋白版本的丰度降低,因此除非采用严格的样品制备程序,否则很难获得有意义的结果。微异质性代表单个位点上聚糖的多样性,而宏异质性描述蛋白质每个位点的糖基化水平。糖肽的富集和衍生化有助于克服这些限制。在 2016 年至 2020 年的时间范围内,文献中提出了几种方法,极大地改善了糖基化分析的结果,如本综述中调查的采样所示。作为 2020 年的一个当前主题,病原体携带的糖蛋白也会引起疾病,这在 SARS CoV2 中可见,导致了 COVID-19 大流行。本综述将讨论棘突糖蛋白的糖蛋白质组学研究以及 ACE2 受体等相互作用蛋白。

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