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p53 动力学、功能和再激活的综合观点。

An integrated view of p53 dynamics, function, and reactivation.

机构信息

Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, CA, 92093, USA.

Dana Farber Cancer Institute, Center for Protein Degradation, Boston, MA, 02215, USA.

出版信息

Curr Opin Struct Biol. 2021 Apr;67:187-194. doi: 10.1016/j.sbi.2020.11.005. Epub 2021 Jan 2.

DOI:10.1016/j.sbi.2020.11.005
PMID:33401096
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8985518/
Abstract

The tumor suppressor p53 plays a vital role in responding to cell stressors such as DNA damage, hypoxia, and tumor formation by inducing cell-cycle arrest, senescence, or apoptosis. Expression level alterations and mutational frequency implicates p53 in most human cancers. In this review, we show how both computational and experimental methods have been used to provide an integrated view of p53 dynamics, function, and reactivation potential. We argue that p53 serves as an exceptional case study for developing methods in modeling intrinsically disordered proteins. We describe how these methods can be leveraged to improve p53 reactivation molecule design and other novel therapeutic modalities, such as PROteolysis TARgeting Chimeras (PROTACs).

摘要

肿瘤抑制因子 p53 在应对细胞应激方面发挥着至关重要的作用,如 DNA 损伤、缺氧和肿瘤形成,通过诱导细胞周期停滞、衰老或细胞凋亡来实现。p53 的表达水平改变和突变频率暗示其与大多数人类癌症有关。在这篇综述中,我们展示了计算和实验方法如何被用于提供对 p53 动力学、功能和重新激活潜力的综合视图。我们认为,p53 是开发用于模拟固有无序蛋白的方法的一个极好的案例研究。我们描述了如何利用这些方法来改善 p53 重新激活分子的设计和其他新型治疗方式,如 PROteolysis TARgeting Chimeras (PROTACs)。

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本文引用的文献

1
Markov state models and NMR uncover an overlooked allosteric loop in p53.马尔可夫状态模型和核磁共振揭示了p53中一个被忽视的变构环。
Chem Sci. 2020 Dec 16;12(5):1891-1900. doi: 10.1039/d0sc05053a.
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Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories.广义相关动力学网络分析:一种从分子动力学轨迹中识别变构通讯的新的高性能方法。
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A balancing act: using small molecules for therapeutic intervention of the p53 pathway in cancer.平衡之举:利用小分子药物干预癌症中的 p53 通路
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Tumorigenic p53 mutants undergo common structural disruptions including conversion to α-sheet structure.致癌性 p53 突变体经历常见的结构破坏,包括转化为 α-螺旋结构。
Protein Sci. 2020 Sep;29(9):1983-1999. doi: 10.1002/pro.3921. Epub 2020 Aug 17.
5
Characterization of partially ordered states in the intrinsically disordered N-terminal domain of p53 using millisecond molecular dynamics simulations.使用毫秒分子动力学模拟对 p53 的无规则卷曲 N 端结构域中的部分有序状态进行表征。
Sci Rep. 2020 Jul 24;10(1):12402. doi: 10.1038/s41598-020-69322-2.
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Computational Investigation on the p53-MDM2 Interaction Using the Potential of Mean Force Study.基于平均力势研究对p53-MDM2相互作用的计算研究
ACS Omega. 2020 Apr 10;5(15):8449-8462. doi: 10.1021/acsomega.9b03372. eCollection 2020 Apr 21.
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J Chem Theory Comput. 2020 Apr 14;16(4):2835-2845. doi: 10.1021/acs.jctc.9b01203. Epub 2020 Apr 1.
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Folding and structural polymorphism of p53 C-terminal domain: One peptide with many conformations.p53 C 端结构域的折叠和结构多态性:一种具有多种构象的肽。
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