Suppr超能文献

六倍体柿雄性不育恢复的分子机制

Molecular Mechanism Underlying Derepressed Male Production in Hexaploid Persimmon.

作者信息

Masuda Kanae, Fujita Naoko, Yang Ho-Wen, Ushijima Koichiro, Kubo Yasutaka, Tao Ryutaro, Akagi Takashi

机构信息

Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan.

Department of Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, IL, United States.

出版信息

Front Plant Sci. 2020 Dec 22;11:567249. doi: 10.3389/fpls.2020.567249. eCollection 2020.

Abstract

Sex expression in plants is often flexible and contributes to the maintenance of genetic diversity within a species. In diploid persimmons (the genus ), the sexuality is controlled by the Y chromosome-encoded small-RNA gene, , and its autosomal counterpart, . Hexaploid Oriental persimmon () evolved more flexible sex expression, where genetically male individuals carrying can produce both male and female flowers (monoecy). This is due to (semi-)inactivation of by the -SINE retrotransposon insertion on the promoter region and the resultant DNA methylations. Instead, flower sex determination in Oriental persimmon is also dependent on DNA methylation states of . Here, we focused on a cultivar, Kumemaru, which shows stable male flower production. Our results demonstrated that cv. Kumemaru carries with -SINE, which was highly methylated as well as in other monoecious cultivars; nevertheless, gene could have a basal expression level. Transcriptomic analysis between cv. Kumemaru and 14 cultivars that predominantly produce female flowers showed differentially expressed genes (DEGs) specific to cv. Kumemaru, which is mainly involved in stress responses. Co-expression gene networks focusing on the DEGs also suggested the involvement of stress signals, mainly via gibberellin (GA), salicylic acid (SA), and especially jasmonic acid (JA) signal pathways. We also identified potential regulators of this co-expression module, represented by the TCP4 transcription factor. Furthermore, we attempted to identify cv. Kumemaru-specific transcript polymorphisms potentially contributing to derepressed expression by cataloging subsequences (k-mers) in the transcriptomic reads from cv. Kumemaru and the other 14 female cultivars. Overall, although the direct genetic factor to activate remains to be solved, our results implied the involvement of stress signals in the release of silenced and the resultant continuous male production.

摘要

植物中的性别表达通常具有灵活性,有助于维持物种内的遗传多样性。在二倍体柿子(柿属)中,性别由Y染色体编码的小RNA基因以及其常染色体对应基因控制。六倍体东方柿进化出了更灵活的性别表达,携带该基因的遗传雄性个体可以产生雄花和雌花(雌雄同株)。这是由于该基因启动子区域插入了-SINE逆转座子导致其(部分)失活以及由此产生的DNA甲基化。相反,东方柿的花性别决定也取决于该基因的DNA甲基化状态。在这里,我们重点研究了一个品种“久保丸”,它表现出稳定的雄花生产。我们的结果表明,“久保丸”品种携带带有-SINE的该基因,其与其他雌雄同株品种一样高度甲基化;然而,该基因可能具有基础表达水平。对“久保丸”品种和14个主要产生雌花的品种进行转录组分析,发现了“久保丸”品种特有的差异表达基因(DEG),这些基因主要参与应激反应。聚焦于这些差异表达基因的共表达基因网络也表明应激信号参与其中,主要通过赤霉素(GA)、水杨酸(SA),尤其是茉莉酸(JA)信号通路。我们还鉴定了这个共表达模块的潜在调节因子,以TCP4转录因子为代表。此外,我们试图通过对“久保丸”品种和其他14个雌性品种的转录组读数中的子序列(k-mer)进行编目,来鉴定可能导致该基因表达去抑制的“久保丸”品种特有的转录多态性。总体而言,尽管激活该基因的直接遗传因素仍有待解决,但我们的结果暗示应激信号参与了沉默该基因的释放以及由此产生的持续雄性生产。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验