Liu Na, Li Qingzhong, McDowell Sean A C
The Laboratory of Theoretical and Computational Chemistry, School of Chemistry and Chemical Engineering, Yantai University, Yantai, China.
Department of Biological and Chemical Sciences, The University of the West Indies, Cave Hill Campus, Cave Hill, Barbados.
Front Chem. 2020 Dec 9;8:608486. doi: 10.3389/fchem.2020.608486. eCollection 2020.
The pnicogen, chalcogen, and halogen bonds between 6-OXF-fulvene (X = As, Sb, Se, Te, Br, and I) and three nitrogen-containing bases (FCN, HCN, and NH) are compared. For each nitrogen base, the halogen bond is strongest, followed by the pnicogen bond, and the chalcogen bond is weakest. For each type of bond, the binding increases in the FCN < HCN < NH pattern. Both FCN and HCN engage in a bond with comparable strengths and the interaction energies of most bonds are < -6 kcal/mol. However, the strongest base NH forms a much more stable complex, particularly for the halogen bond with the interaction energy going up to -18 kcal/mol. For the same type of interaction, its strength increases as the mass of the central X atom increases. These bonds are different in strength, but all of them are dominated by the electrostatic interaction, with the polarization contribution important for the stronger interaction. The presence of these bonds changes the geometries of 6-OXF-fulvene, particularly for the halogen bond formed by NH, where the F-X-F arrangement is almost vertical to the fulvene ring.
比较了6 - OXF - 富烯(X = As、Sb、Se、Te、Br和I)与三种含氮碱基(FCN、HCN和NH)之间的氮族元素键、氧族元素键和卤键。对于每种含氮碱基,卤键最强,其次是氮族元素键,氧族元素键最弱。对于每种类型的键,其结合力按照FCN < HCN < NH的模式增强。FCN和HCN形成的键强度相当,且大多数键的相互作用能 < -6 kcal/mol。然而,最强的碱基NH形成的配合物要稳定得多,特别是对于卤键,其相互作用能高达 -18 kcal/mol。对于同一类型的相互作用,其强度随着中心X原子质量的增加而增强。这些键的强度各不相同,但它们都以静电相互作用为主导,极化作用对较强的相互作用很重要。这些键的存在改变了6 - OXF - 富烯的几何结构,特别是由NH形成的卤键,其中F - X - F排列几乎垂直于富烯环。