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从 sMRI 图像中提取基于 ROI 的 Contourlet 子带能量特征用于阿尔茨海默病分类。

Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer's Disease Classification.

出版信息

IEEE/ACM Trans Comput Biol Bioinform. 2022 May-Jun;19(3):1627-1639. doi: 10.1109/TCBB.2021.3051177. Epub 2022 Jun 3.

DOI:10.1109/TCBB.2021.3051177
PMID:33434134
Abstract

Structural magnetic resonance imaging (sMRI)-based Alzheimer's disease (AD) classification and its prodromal stage-mild cognitive impairment (MCI) classification have attracted many attentions and been widely investigated in recent years. Owing to the high dimensionality, representation of the sMRI image becomes a difficult issue in AD classification. Furthermore, regions of interest (ROI) reflected in the sMRI image are not characterized properly by spatial analysis techniques, which has been a main cause of weakening the discriminating ability of the extracted spatial feature. In this study, we propose a ROI-based contourlet subband energy (ROICSE) feature to represent the sMRI image in the frequency domain for AD classification. Specifically, a preprocessed sMRI image is first segmented into 90 ROIs by a constructed brain mask. Instead of extracting features from the 90 ROIs in the spatial domain, the contourlet transform is performed on each of these ROIs to obtain their energy subbands. And then for an ROI, a subband energy (SE) feature vector is constructed to capture its energy distribution and contour information. Afterwards, SE feature vectors of the 90 ROIs are concatenated to form a ROICSE feature of the sMRI image. Finally, support vector machine (SVM) classifier is used to classify 880 subjects from ADNI and OASIS databases. Experimental results show that the ROICSE approach outperforms six other state-of-the-art methods, demonstrating that energy and contour information of the ROI are important to capture differences between the sMRI images of AD and HC subjects. Meanwhile, brain regions related to AD can also be found using the ROICSE feature, indicating that the ROICSE feature can be a promising assistant imaging marker for the AD diagnosis via the sMRI image. Code and Sample IDs of this paper can be downloaded at https://github.com/NWPU-903PR/ROICSE.git.

摘要

基于结构磁共振成像 (sMRI) 的阿尔茨海默病 (AD) 分类及其前驱期轻度认知障碍 (MCI) 分类近年来引起了广泛关注和研究。由于高维性,sMRI 图像的表示成为 AD 分类中的一个难题。此外,sMRI 图像中反映的感兴趣区域 (ROI) 不能通过空间分析技术进行适当的特征描述,这是降低提取空间特征区分能力的主要原因。在这项研究中,我们提出了一种基于 ROI 的轮廓子带能量 (ROICSE) 特征,用于在频域中表示 sMRI 图像进行 AD 分类。具体来说,首先通过构建的大脑掩模将预处理后的 sMRI 图像分割成 90 个 ROI。我们不是从空间域的 90 个 ROI 中提取特征,而是对每个 ROI 进行轮廓变换以获得它们的能量子带。然后,对于一个 ROI,构建一个子带能量 (SE) 特征向量来捕捉其能量分布和轮廓信息。之后,将 90 个 ROI 的 SE 特征向量串联起来,形成 sMRI 图像的 ROICSE 特征。最后,使用支持向量机 (SVM) 分类器对 ADNI 和 OASIS 数据库中的 880 名受试者进行分类。实验结果表明,ROICSE 方法优于其他六种先进方法,表明 ROI 的能量和轮廓信息对于捕捉 AD 和 HC 受试者 sMRI 图像之间的差异非常重要。同时,还可以使用 ROICSE 特征找到与 AD 相关的脑区,表明 ROICSE 特征可以作为通过 sMRI 图像进行 AD 诊断的有前途的辅助成像标志物。本文的代码和样本 ID 可以在 https://github.com/NWPU-903PR/ROICSE.git 下载。

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