Usc Vecpar-ANSES LSA, EA 7510, SFR Cap Santé, Université de Reims Champagne-Ardenne, 51 rue Cognacq-Jay, 51096, Reims Cedex, France.
Department of Medical Pharmacology, EA 3801, SFR CAP Santé, Reims University Hospital, 51, rue Cognacq-Jay, 51095, Reims Cedex, France.
Sci Rep. 2021 Jan 13;11(1):521. doi: 10.1038/s41598-020-78053-3.
Biting midges are widespread around the world and play an essential role in the epidemiology of over 100 veterinary and medical diseases. For taxonomists, it is difficult to correctly identify species because of affinities among cryptic species and species complexes. In this study, species boundaries were examined for C. clastrieri and C. festivipennis and compared with six other Culicoides species. The classifiers are partial least squares discriminant analysis (PLS-DA) and sparse partial least squares discriminant analysis (sPLS-DA).The performance of the proposed method was evaluated using four models: (i) geometric morphometrics applied to wings; (ii) morphological wing characters, (iii) "Full wing" (landmarks and morphological characters) and (iv) "Full model" (morphological characters-wing, head, abdomen, legs-and wing landmarks). Double cross-validation procedures were used to validate the predictive ability of PLS-DA and sPLS-DA models. The AUC (area under the ROC curve) and the balanced error rate showed that the sPLS-DA model performs better than the PLS-DA model. Our final sPLS-DA analysis on the full wing and full model, with nine and seven components respectively, managed to perfectly classify our specimens. The C. clastrieri and C. festivipennis sequences, containing both COI and 28S genes, revealed our markers' weak discrimination power, with an intraspecific and interspecific divergence of 0.4% and 0.1% respectively. Moreover, C. clastrieri and C. festivipennis are grouped in the same clade. The morphology and wing patterns of C. clastrieri and C. festivipennis can be used to clearly distinguish them. Our study confirms C. clastrieri and C. festivipennis as two distinct species. Our results show that caution should be applied when relying solely on DNA barcodes for species identification or discovery.
吸血蠓在世界各地广泛分布,在超过 100 种兽医和医学疾病的流行病学中发挥着重要作用。对于分类学家来说,由于隐种和种复合体之间的亲缘关系,正确识别物种是困难的。在这项研究中,我们检查了 C. clastrieri 和 C. festivipennis 的物种界限,并将其与其他六种库蠓进行了比较。分类器是偏最小二乘判别分析(PLS-DA)和稀疏偏最小二乘判别分析(sPLS-DA)。我们使用四种模型评估了所提出方法的性能:(i)应用于翅膀的几何形态测量学;(ii)形态翅膀特征;(iii)“全翅”(地标和形态特征)和(iv)“全模型”(形态特征-翅、头、腹、腿和翅地标)。使用双交叉验证程序验证了 PLS-DA 和 sPLS-DA 模型的预测能力。AUC(ROC 曲线下的面积)和平衡错误率表明,sPLS-DA 模型的性能优于 PLS-DA 模型。我们对全翅和全模型的最终 sPLS-DA 分析,分别有九个和七个成分,成功地对我们的样本进行了完美分类。C. clastrieri 和 C. festivipennis 的序列,包含 COI 和 28S 基因,显示出我们标记物的弱鉴别力,种内和种间的分歧分别为 0.4%和 0.1%。此外,C. clastrieri 和 C. festivipennis 被归为同一进化枝。C. clastrieri 和 C. festivipennis 的形态和翅膀模式可用于清楚地区分它们。我们的研究证实了 C. clastrieri 和 C. festivipennis 是两个不同的物种。我们的研究结果表明,在依赖 DNA 条形码进行物种鉴定或发现时,应谨慎行事。