文献检索文档翻译深度研究
Suppr Zotero 插件Zotero 插件
邀请有礼套餐&价格历史记录

新学期,新优惠

限时优惠:9月1日-9月22日

30天高级会员仅需29元

1天体验卡首发特惠仅需5.99元

了解详情
不再提醒
插件&应用
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
高级版
套餐订阅购买积分包
AI 工具
文献检索文档翻译深度研究
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2025

体内筛选非编码基因座揭示 是造血过程中 Ikaros 依赖性检查点的守门员。

An in vivo screen of noncoding loci reveals that is a gatekeeper of an Ikaros-dependent checkpoint during haematopoiesis.

机构信息

Department of Genetics, Yale School of Medicine, New Haven, CT 06520.

Howard Hughes Medical Institute, New Haven, CT 06520.

出版信息

Proc Natl Acad Sci U S A. 2021 Jan 19;118(3). doi: 10.1073/pnas.1918062118.


DOI:10.1073/pnas.1918062118
PMID:33446502
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7826330/
Abstract

Haematopoiesis relies on tightly controlled gene expression patterns as development proceeds through a series of progenitors. While the regulation of hematopoietic development has been well studied, the role of noncoding elements in this critical process is a developing field. In particular, the discovery of new regulators of lymphopoiesis could have important implications for our understanding of the adaptive immune system and disease. Here we elucidate how a noncoding element is capable of regulating a broadly expressed transcription factor, Ikaros, in a lymphoid lineage-specific manner, such that it imbues Ikaros with the ability to specify the lymphoid lineage over alternate fates. Deletion of the locus, which is proximal to Ikaros, led to a severe reduction in early lymphoid progenitors, exerting control over the earliest fate decisions during lymphoid lineage commitment. locus deletion led to alterations in Ikaros isoform expression and a significant reduction in Ikaros protein. The locus may function through direct DNA interaction as Hi-C analysis demonstrated an interaction between the two loci. Finally, we identify an Ikaros-regulated erythroid-lymphoid checkpoint that is governed by in a lymphoid-lineage-specific manner. appears to act as a gatekeeper of Ikaros's broad lineage-specifying functions, selectively stabilizing Ikaros activity in the lymphoid lineage and permitting diversion to the erythroid fate in its absence. These findings represent a key illustration of how a transcription factor with broad lineage expression must work in concert with noncoding elements to orchestrate hematopoietic lineage commitment.

摘要

造血依赖于严格控制的基因表达模式,因为发育过程中要经过一系列祖细胞。虽然造血发育的调控已经得到了很好的研究,但非编码元件在这个关键过程中的作用是一个正在发展的领域。特别是,新的淋巴发生调节剂的发现可能对我们理解适应性免疫系统和疾病具有重要意义。在这里,我们阐明了非编码元件如何以淋巴谱系特异性的方式调节广泛表达的转录因子 Ikaros,从而赋予 Ikaros 指定淋巴谱系而不是替代命运的能力。缺失靠近 Ikaros 的 位点导致早期淋巴祖细胞严重减少,对淋巴谱系承诺过程中的最早命运决定施加控制。 位点缺失导致 Ikaros 同工型表达的改变和 Ikaros 蛋白的显著减少。 位点可能通过直接 DNA 相互作用起作用,因为 Hi-C 分析表明两个位点之间存在相互作用。最后,我们确定了一个由 Ikaros 调节的红系-淋巴系检查点,该检查点以淋巴谱系特异性的方式受 控制。 似乎充当 Ikaros 的广泛谱系指定功能的守门员,在缺乏 的情况下,选择性地稳定 Ikaros 在淋巴谱系中的活性,并允许向红细胞命运转移。这些发现代表了一个关键的例证,即具有广泛谱系表达的转录因子必须与非编码元件协同作用,以协调造血谱系的承诺。

相似文献

[1]
An in vivo screen of noncoding loci reveals that is a gatekeeper of an Ikaros-dependent checkpoint during haematopoiesis.

Proc Natl Acad Sci U S A. 2021-1-19

[2]
Ikaros isoform x is selectively expressed in myeloid differentiation.

J Immunol. 2003-3-15

[3]
Ikaros fingers on lymphocyte differentiation.

Int J Hematol. 2014-9

[4]
Awakening lineage potential by Ikaros-mediated transcriptional priming.

Curr Opin Immunol. 2010-3-17

[5]
Ikaros expression in human hematopoietic lineages.

Exp Hematol. 2000-11

[6]
Genome-wide identification of Ikaros targets elucidates its contribution to mouse B-cell lineage specification and pre-B-cell differentiation.

Blood. 2013-1-9

[7]
The making of a lymphocyte: the choice among disparate cell fates and the IKAROS enigma.

Genes Dev. 2017-3-1

[8]
Genome-wide lineage-specific transcriptional networks underscore Ikaros-dependent lymphoid priming in hematopoietic stem cells.

Immunity. 2009-4-17

[9]
Ikaros and chromatin regulation in early hematopoiesis.

Curr Opin Immunol. 2007-4

[10]
Early hematopoietic lineage restrictions directed by Ikaros.

Nat Immunol. 2006-4

引用本文的文献

[1]
Multi-omics integration analysis identifies INPP4B as a T-cell-specific activation suppressor.

Clin Transl Med. 2025-8

[2]
A T-specific long noncoding RNA maintains immune-metabolic homeostasis in aging liver.

Nat Aging. 2023-7

[3]
The ubiquitin ligase Cul5 regulates CD4 T cell fate choice and allergic inflammation.

Nat Commun. 2022-5-19

本文引用的文献

[1]
Transcription imparts architecture, function and logic to enhancer units.

Nat Genet. 2020-9-21

[2]
Wapl repression by Pax5 promotes V gene recombination by Igh loop extrusion.

Nature. 2020-7-1

[3]
Precocious expression of Blimp1 in B cells causes autoimmune disease with increased self-reactive plasma cells.

EMBO J. 2018-11-29

[4]
Integrating single-cell transcriptomic data across different conditions, technologies, and species.

Nat Biotechnol. 2018-4-2

[5]
The many faces of IKZF1 in B-cell precursor acute lymphoblastic leukemia.

Haematologica. 2018-3-8

[6]
The functions and unique features of long intergenic non-coding RNA.

Nat Rev Mol Cell Biol. 2017-11-15

[7]
Emerging mechanisms of long noncoding RNA function during normal and malignant hematopoiesis.

Blood. 2017-11-2

[8]
Genetic control of erythropoiesis.

Curr Opin Hematol. 2017-5

[9]
Local regulation of gene expression by lncRNA promoters, transcription and splicing.

Nature. 2016-11-17

[10]
Long noncoding RNA (lincRNA), a new paradigm in gene expression control.

Funct Integr Genomics. 2017-5

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

推荐工具

医学文档翻译智能文献检索