Department of Genetics, Yale School of Medicine, New Haven, CT 06520.
Howard Hughes Medical Institute, New Haven, CT 06520.
Proc Natl Acad Sci U S A. 2021 Jan 19;118(3). doi: 10.1073/pnas.1918062118.
Haematopoiesis relies on tightly controlled gene expression patterns as development proceeds through a series of progenitors. While the regulation of hematopoietic development has been well studied, the role of noncoding elements in this critical process is a developing field. In particular, the discovery of new regulators of lymphopoiesis could have important implications for our understanding of the adaptive immune system and disease. Here we elucidate how a noncoding element is capable of regulating a broadly expressed transcription factor, Ikaros, in a lymphoid lineage-specific manner, such that it imbues Ikaros with the ability to specify the lymphoid lineage over alternate fates. Deletion of the locus, which is proximal to Ikaros, led to a severe reduction in early lymphoid progenitors, exerting control over the earliest fate decisions during lymphoid lineage commitment. locus deletion led to alterations in Ikaros isoform expression and a significant reduction in Ikaros protein. The locus may function through direct DNA interaction as Hi-C analysis demonstrated an interaction between the two loci. Finally, we identify an Ikaros-regulated erythroid-lymphoid checkpoint that is governed by in a lymphoid-lineage-specific manner. appears to act as a gatekeeper of Ikaros's broad lineage-specifying functions, selectively stabilizing Ikaros activity in the lymphoid lineage and permitting diversion to the erythroid fate in its absence. These findings represent a key illustration of how a transcription factor with broad lineage expression must work in concert with noncoding elements to orchestrate hematopoietic lineage commitment.
造血依赖于严格控制的基因表达模式,因为发育过程中要经过一系列祖细胞。虽然造血发育的调控已经得到了很好的研究,但非编码元件在这个关键过程中的作用是一个正在发展的领域。特别是,新的淋巴发生调节剂的发现可能对我们理解适应性免疫系统和疾病具有重要意义。在这里,我们阐明了非编码元件如何以淋巴谱系特异性的方式调节广泛表达的转录因子 Ikaros,从而赋予 Ikaros 指定淋巴谱系而不是替代命运的能力。缺失靠近 Ikaros 的 位点导致早期淋巴祖细胞严重减少,对淋巴谱系承诺过程中的最早命运决定施加控制。 位点缺失导致 Ikaros 同工型表达的改变和 Ikaros 蛋白的显著减少。 位点可能通过直接 DNA 相互作用起作用,因为 Hi-C 分析表明两个位点之间存在相互作用。最后,我们确定了一个由 Ikaros 调节的红系-淋巴系检查点,该检查点以淋巴谱系特异性的方式受 控制。 似乎充当 Ikaros 的广泛谱系指定功能的守门员,在缺乏 的情况下,选择性地稳定 Ikaros 在淋巴谱系中的活性,并允许向红细胞命运转移。这些发现代表了一个关键的例证,即具有广泛谱系表达的转录因子必须与非编码元件协同作用,以协调造血谱系的承诺。
Proc Natl Acad Sci U S A. 2021-1-19
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