Reed Elizabeth, Sanderson Robert, Sanderson Barbara, Ramachandran Padmini, Commichaux Seth, Brown Eric, Zheng Jie, Strain Errol, Ottesen Andrea
Center for Food Safety and Applied Nutrition, Food and Drug Administration, U.S. Department of Health and Human Services, College Park, Maryland, USA
Jonathan's Sprouts, Rochester, Massachusetts, USA.
Microbiol Resour Announc. 2021 Jan 14;10(2):e00906-20. doi: 10.1128/MRA.00906-20.
Sprouts have been implicated in numerous foodborne illness outbreaks. To better understand baseline microbial profiles of irrigation water and subsequent spent irrigation water of alfalfa sprouts, DNA from water was extracted, sequenced, and annotated with CosmosID and a custom pipeline to provide bacterial, fungal, protist, and antimicrobial resistance gene profiles.
豆芽已被认定与众多食源性疾病暴发有关。为了更好地了解苜蓿芽灌溉水及其后续用过的灌溉水的基线微生物概况，从水中提取DNA，进行测序，并使用CosmosID和自定义流程进行注释，以提供细菌、真菌、原生生物和抗微生物抗性基因概况。
