UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.
作者信息
Chawla Smriti, Samydurai Sudhagar, Kong Say Li, Wu Zhengwei, Wang Zhenxun, Tam Wai Leong, Sengupta Debarka, Kumar Vibhor
机构信息
Department for Computational Biology, Indraprastha Institute of Information Technology, Delhi 110020, India.
Genome Institute of Singapore, Agency for Science Technology and Research, Singapore, Singapore.
出版信息
Nucleic Acids Res. 2021 Feb 22;49(3):1801. doi: 10.1093/nar/gkab018.
Abstract
摘要
相似文献
1
UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.
Nucleic Acids Res. 2021 Feb 22;49(3):1801. doi: 10.1093/nar/gkab018.
2
UniPath: a uniform approach for pathway and gene-set based analysis of heterogeneity in single-cell epigenome and transcriptome profiles.
Nucleic Acids Res. 2021 Feb 22;49(3):e13. doi: 10.1093/nar/gkaa1138.
3
Dr.seq2: A quality control and analysis pipeline for parallel single cell transcriptome and epigenome data.
PLoS One. 2017 Jul 3;12(7):e0180583. doi: 10.1371/journal.pone.0180583. eCollection 2017.
4
MATCHER: manifold alignment reveals correspondence between single cell transcriptome and epigenome dynamics.
Genome Biol. 2017 Jul 24;18(1):138. doi: 10.1186/s13059-017-1269-0.
5
Epigenome and transcriptome study of moringa isothiocyanate in mouse kidney mesangial cells induced by high glucose, a potential model for diabetic-induced nephropathy.
AAPS J. 2019 Dec 5;22(1):8. doi: 10.1208/s12248-019-0393-z.
6
An integrated epigenome and transcriptome analysis identifies PAX2 as a master regulator of drug resistance in high grade pancreatic ductal adenocarcinoma.
PLoS One. 2019 Oct 17;14(10):e0223554. doi: 10.1371/journal.pone.0223554. eCollection 2019.
7
The age of the bull influences the transcriptome and epigenome of blastocysts produced by IVF.
Theriogenology. 2020 Mar 1;144:122-131. doi: 10.1016/j.theriogenology.2019.12.020. Epub 2019 Dec 27.
8
Generation of TALE-Based Designer Epigenome Modifiers.
Methods Mol Biol. 2018;1767:89-109. doi: 10.1007/978-1-4939-7774-1_4.
9
Transcriptome analysis of genes and pathways associated with salt tolerance in alfalfa under non-uniform salt stress.
Plant Physiol Biochem. 2020 Jun;151:323-333. doi: 10.1016/j.plaphy.2020.03.035. Epub 2020 Mar 30.
10
scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures.
Bioinformatics. 2020 Aug 15;36(14):4217-4219. doi: 10.1093/bioinformatics/btaa532.
引用本文的文献
1
Marker-free characterization of full-length transcriptomes of single live circulating tumor cells.
Genome Res. 2023 Jan;33(1):80-95. doi: 10.1101/gr.276600.122. Epub 2022 Nov 22.
2
Gene expression based inference of cancer drug sensitivity.
Nat Commun. 2022 Sep 27;13(1):5680. doi: 10.1038/s41467-022-33291-z.
3
α-Catulin promotes cancer stemness by antagonizing WWP1-mediated KLF5 degradation in lung cancer.
Theranostics. 2022 Jan 1;12(3):1173-1186. doi: 10.7150/thno.63627. eCollection 2022.
Zotero 插件