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HEMGN and SLC2A1 might be potential diagnostic biomarkers of steroid-induced osteonecrosis of femoral head: study based on WGCNA and DEGs screening.

作者信息

Wu Zhixin, Wen Yinxian, Fan Guanlan, He Hangyuan, Zhou Siqi, Chen Liaobin

机构信息

Department of Orthopedic Surgery, Zhongnan Hospital of Wuhan University, 169 Donghu Road, Wuhan City, 430071, Hubei Province, China.

Department of Obstetrics and Gynecology, Zhongnan Hospital of Wuhan University, Wuhan, Hubei, China.

出版信息

BMC Musculoskelet Disord. 2021 Jan 15;22(1):85. doi: 10.1186/s12891-021-03958-7.


DOI:10.1186/s12891-021-03958-7
PMID:33451334
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7811219/
Abstract

BACKGROUND: Steroid-induced osteonecrosis of the femoral head (SONFH) is a chronic and crippling bone disease. This study aims to reveal novel diagnostic biomarkers of SONFH. METHODS: The GSE123568 dataset based on peripheral blood samples from 10 healthy individuals and 30 SONFH patients was used for weighted gene co-expression network analysis (WGCNA) and differentially expressed genes (DEGs) screening. The genes in the module related to SONFH and the DEGs were extracted for Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Genes with |gene significance| > 0.7 and |module membership| > 0.8 were selected as hub genes in modules. The DEGs with the degree of connectivity ≥5 were chosen as hub genes in DEGs. Subsequently, the overlapping genes of hub genes in modules and hub genes in DEGs were selected as key genes for SONFH. And then, the key genes were verified in another dataset, and the diagnostic value of key genes was evaluated by receiver operating characteristic (ROC) curve. RESULTS: Nine gene co-expression modules were constructed via WGCNA. The brown module with 1258 genes was most significantly correlated with SONFH and was identified as the key module for SONFH. The results of functional enrichment analysis showed that the genes in the key module were mainly enriched in the inflammatory response, apoptotic process and osteoclast differentiation. A total of 91 genes were identified as hub genes in the key module. Besides, 145 DEGs were identified by DEGs screening and 26 genes were identified as hub genes of DEGs. Overlapping genes of hub genes in the key module and hub genes in DEGs, including RHAG, RNF14, HEMGN, and SLC2A1, were further selected as key genes for SONFH. The diagnostic value of these key genes for SONFH was confirmed by ROC curve. The validation results of these key genes in GSE26316 dataset showed that only HEMGN and SLC2A1 were downregulated in the SONFH group, suggesting that they were more likely to be diagnostic biomarkers of SOFNH than RHAG and RNF14. CONCLUSIONS: Our study identified that two key genes, HEMGN and SLC2A1, might be potential diagnostic biomarkers of SONFH.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/c37cc5c30a5f/12891_2021_3958_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/bdd225aa15d1/12891_2021_3958_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/bc8b09dcc385/12891_2021_3958_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/6ba7b165daa0/12891_2021_3958_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/8a7a58ec3e37/12891_2021_3958_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/75f365ffbffa/12891_2021_3958_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/188ed488539b/12891_2021_3958_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/c37cc5c30a5f/12891_2021_3958_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/bdd225aa15d1/12891_2021_3958_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/bc8b09dcc385/12891_2021_3958_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/6ba7b165daa0/12891_2021_3958_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/8a7a58ec3e37/12891_2021_3958_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/75f365ffbffa/12891_2021_3958_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/188ed488539b/12891_2021_3958_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2011/7811219/c37cc5c30a5f/12891_2021_3958_Fig7_HTML.jpg

相似文献

[1]
HEMGN and SLC2A1 might be potential diagnostic biomarkers of steroid-induced osteonecrosis of femoral head: study based on WGCNA and DEGs screening.

BMC Musculoskelet Disord. 2021-1-15

[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
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引用本文的文献

[1]
Pathological mechanisms and related markers of steroid-induced osteonecrosis of the femoral head.

Ann Med. 2024-12

[2]
Bioinformatics-Based Analysis of Key Genes in Steroid-Induced Osteonecrosis of the Femoral Head That Are Associated with Copper Metabolism.

Biomedicines. 2023-3-13

[3]
Identification and Validation of Potential Ferroptosis-Related Genes in Glucocorticoid-Induced Osteonecrosis of the Femoral Head.

Medicina (Kaunas). 2023-2-6

[4]
Identification of Inflammation-Related Genes and Exploration of Regulatory Mechanisms in Patients with Osteonecrosis of the Femoral Head.

Biomed Res Int. 2022

[5]
Integrated bioinformatics analysis and screening of hub genes in polycystic ovary syndrome.

Endocrine. 2022-12

[6]
Importance of GLUT Transporters in Disease Diagnosis and Treatment.

Int J Mol Sci. 2022-8-4

[7]
Identifying DUSP-1 and FOSB as hub genes in immunoglobulin A nephropathy by WGCNA and DEG screening and validation.

PeerJ. 2022

[8]
ARG2, MAP4K5 and TSTA3 as Diagnostic Markers of Steroid-Induced Osteonecrosis of the Femoral Head and Their Correlation With Immune Infiltration.

Front Genet. 2021-7-26

本文引用的文献

[1]
Bioinformatics analysis of microRNA linked to ubiquitin proteasome system in traumatic osteonecrosis of the femoral head.

Medicine (Baltimore). 2020-8-14

[2]
Steroid-induced osteonecrosis of the femoral head reveals enhanced reactive oxygen species and hyperactive osteoclasts.

Int J Biol Sci. 2020

[3]
The pathogenesis, diagnosis and clinical manifestations of steroid-induced osteonecrosis.

J Autoimmun. 2020-6

[4]
Identification of key genes and expression profiles in osteoarthritis by co-expressed network analysis.

Comput Biol Chem. 2020-4

[5]
Integrated transcriptomic analysis reveals hub genes involved in diagnosis and prognosis of pancreatic cancer.

Mol Med. 2019-11-9

[6]
MicroRNA‑186‑5p mediates osteoblastic differentiation and cell viability by targeting CXCL13 in non‑traumatic osteonecrosis.

Mol Med Rep. 2019-9-26

[7]
Simvastatin induces breast cancer cell death through oxidative stress up-regulating miR-140-5p.

Aging (Albany NY). 2019-5-28

[8]
Increased glycolysis mediates Wnt7b-induced bone formation.

FASEB J. 2019-3-26

[9]
Potential biomarkers of acute myocardial infarction based on weighted gene co-expression network analysis.

Biomed Eng Online. 2019-1-25

[10]
Emerging Biomarkers in Bladder Cancer Identified by Network Analysis of Transcriptomic Data.

Front Oncol. 2018-10-12

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