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激素性股骨头坏死患者内质网应激相关基因的鉴定与验证

Identification and validation of endoplasmic reticulum stress-related genes in patients with steroid-induced osteonecrosis of the femoral head.

作者信息

Wu Tingyu, Shi Weipeng, Zhou Yinxue, Guo Sijia, Tian Hua, Jiang Yaping, Li Weiyan, Wang Yingzhen, Li Tao

机构信息

Department of Joint Surgery, The Affiliated Hospital of Qingdao University, No. 59, Haier Road, Qingdao, 266003, China.

Department of Respiratory and Critical Care Medicine, The Affiliated Hospital of Qingdao University, Qingdao, 266003, China.

出版信息

Sci Rep. 2024 Sep 16;14(1):21634. doi: 10.1038/s41598-024-72941-8.

DOI:10.1038/s41598-024-72941-8
PMID:39284931
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11405670/
Abstract

Steroid-induced osteonecrosis of the femoral head (SONFH) is a debilitating condition caused by long-term corticosteroid use, leading to impaired blood flow and bone cell death. The disruption of cellular processes and promotion of apoptosis by endoplasmic reticulum stress (ERS) is implicated in the pathogenesis of SONFH. We identified ERS-associated genes in SONFH and investigated their potential as therapeutic targets. We analysed the GSE123568 GEO dataset to identify differentially expressed genes (DEGs) related to ERS in SONFH. We conducted Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses, identified hub genes by protein-protein interaction (PPI) analyses, and evaluated their functions by gene set enrichment analysis (GSEA). We constructed mRNA-miRNA networks, identified potential therapeutics, and assessed immune cell infiltration. We performed cross-validation using the GEO dataset GSE74089, qRT-PCR on clinical samples from patients with SONFH and controls, and a receiver operating characteristic (ROC) curve analysis to assess the diagnostic performance of the hub genes. We identified 195 ERS-related genes in SONFH, which were primarily involved in oxidative stress, immune responses, and metabolic pathways. The PPI network suggested CXCL8, STAT3, IL1B, TLR4, PTGS2, TLR2, CASP1, CYBB, CAT, and HOMX1 to be key hub genes, which were shown by GSEA to be involved in biological pathways related to metabolism, immune modulation, and cellular integrity. We also identified 261 microRNAs (miRNAs) as well as drugs such as dibenziodolium and N-acetyl-L-cysteine that modulated inflammatory responses in SONFH. Twenty-two immune cell subtypes showed significant correlations, such as a positive correlation between activated mast cells and Tregs, and patients with SONFH had fewer dendritic cells than controls. The hub genes CYBB and TLR4 showed significant correlations with M1 macrophages and CD8 T cells, respectively. Cross-validation and qRT-PCR confirmed the upregulation of STAT3, IL1B, TLR2, and CASP1 in patients with SONFH, validating the bioinformatics findings. An ROC curve analysis confirmed the diagnostic potential of the hub genes. The top 10 hub genes show promise as ERS-related diagnostic biomarkers for SONFH. We discovered that 261 miRNAs, including hsa-miR-23, influence these genes and identified potential therapeutics such as dibenziodolium and simvastatin. Immune profiling indicated altered immune functions in SONFH, with significant correlations among immune cell types. Validation confirmed the upregulation of STAT3, IL1B, TLR2 and CASP1, which had diagnostic potential. The findings suggest potential diagnostic markers and therapeutic targets for SONFH.

摘要

类固醇诱导的股骨头坏死(SONFH)是一种因长期使用皮质类固醇导致的使人衰弱的病症,会导致血流受损和骨细胞死亡。内质网应激(ERS)引起的细胞过程破坏和细胞凋亡促进与SONFH的发病机制有关。我们在SONFH中鉴定了与ERS相关的基因,并研究了它们作为治疗靶点的潜力。我们分析了GSE123568基因表达综合数据库(GEO)数据集,以鉴定SONFH中与ERS相关的差异表达基因(DEG)。我们进行了基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,通过蛋白质-蛋白质相互作用(PPI)分析鉴定了枢纽基因,并通过基因集富集分析(GSEA)评估了它们的功能。我们构建了mRNA- miRNA网络,鉴定了潜在的治疗方法,并评估了免疫细胞浸润情况。我们使用GEO数据集GSE74089进行了交叉验证,对SONFH患者和对照组的临床样本进行了qRT-PCR,并进行了受试者工作特征(ROC)曲线分析,以评估枢纽基因的诊断性能。我们在SONFH中鉴定了195个与ERS相关的基因,这些基因主要参与氧化应激、免疫反应和代谢途径。PPI网络表明,趋化因子配体8(CXCL8)、信号转导和转录激活因子3(STAT3)、白细胞介素1β(IL1B)、Toll样受体4(TLR4)、前列腺素内过氧化物合酶2(PTGS2)、Toll样受体2(TLR2)、半胱天冬酶1(CASP1)、细胞色素b-245β链(CYBB)、过氧化氢酶(CAT)和含血红素加氧酶1(HOMX1)是关键枢纽基因,GSEA显示这些基因参与与代谢、免疫调节和细胞完整性相关的生物学途径。我们还鉴定了261种微小RNA(miRNA)以及诸如二苯碘鎓和N-乙酰-L-半胱氨酸等可调节SONFH炎症反应的药物。22种免疫细胞亚型显示出显著相关性,例如活化肥大细胞与调节性T细胞(Tregs)之间呈正相关,并且SONFH患者的树突状细胞比对照组少。枢纽基因CYBB和TLR4分别与M1巨噬细胞和CD8 T细胞显示出显著相关性。交叉验证和qRT-PCR证实了SONFH患者中STAT3、IL1B、TLR2和CASP1的上调,验证了生物信息学研究结果。ROC曲线分析证实了枢纽基因的诊断潜力。前10个枢纽基因有望作为SONFH中与ERS相关的诊断生物标志物。我们发现包括hsa-miR-23在内的261种miRNA影响这些基因,并鉴定了诸如二苯碘鎓和辛伐他汀等潜在治疗方法。免疫谱分析表明SONFH中的免疫功能发生改变,免疫细胞类型之间存在显著相关性。验证证实了STAT3、IL1B、TLR2和CASP1的上调,这些基因具有诊断潜力。研究结果提示了SONFH潜在的诊断标志物和治疗靶点。

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